Author

Indu Sivankutty

Boston Children's Hospital

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Sangita ChoudhuryiD· 2 shared Anushka JetlyiD· 1 shared Bélâ SukiiD· 1 shared Bo ZhangiD· 1 shared Chunhui CaiiD· 1 shared Debesh Sahu· 1 shared Deepa Nandan· 1 shared Erica Matsui· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersGenomics

Sangita ChoudhuryORCID

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2 papers

Recent·Most cited

Resolving the molecular niche of pulmonary fibrosis using cryopreserved human precision cut lung slices

Indu Sivankutty, Maniteja Arava, Jae Hun Kim, Zheming An, Erica Matsui, Debesh Sahu, Chunhui Cai, Holger Peter Behrsing, Kaia Gerlovin, Matthew Paul Lech, Bélâ Suki, Ramaswamy Krishnan, Sangita Choudhury

This study uses single-cell spatial transcriptomics on cryopreserved human lung slices to identify molecular features of pulmonary fibrosis niches and their associated signaling pathways.

bioRxiv · Apr 22, 2025 · PreprintGenomics

High-Quality Nuclei Isolation from Postmortem Human Heart Muscle Tissues for Single-Cell Studies

Sarah Araten, Ronald Mathieu, Anushka Jetly, Hoon Shin, Nazia Hilal, Bo Zhang, Katherine S. Morillo, Deepa Nandan, Indu Sivankutty, Ming Hui Chen, Sangita Choudhury

The paper describes a method for isolating high-quality single nuclei from postmortem human heart tissue for DNA and RNA analysis, including quality control measures.

Journal of Molecular and Cellular Cardiology · Mar 26, 2023Peer-reviewedGenetics