From Abandoned Scripts to FAIR Community Pipelines: Rescuing Orphan Bioinformatics Workflows with nf-core - Lessons from Light-Sheet Fluorescence Microscopy
Carolin Schwitalla, Luis Kuhn Cuellar, Matthias Hörtenhuber, Niklas Grote, Tatiana Marianne Woller, Irene Lamberti, Benjamin Pavie, Thomas Küstner, Felix A. Kyere, Ian Curtin, Jason L. Stein, Sven Nahnsen
The paper re-engineers an abandoned MATLAB-based image analysis toolkit into a sustainable, FAIR-compliant Nextflow workflow for light-sheet microscopy.
bioRxiv · Aug 11, 2026 · PreprintBioinformatics