Author

Tatiana Marianne Woller

VIB-UGent Center for Inflammation ResearchORCID 0000-0002-6958-6498Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:imaging· 2 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Benjamin PavieiD· 2 shared Carolin SchwitallaiD· 1 shared Cecilia de HeusiD· 1 shared Felix A. KyereiD· 1 shared Hélène RobergeiD· 1 shared Ian CurtiniD· 1 shared Irene Lamberti· 1 shared Jason L. SteiniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Benjamin PavieORCID

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Author profile →

2 papers

Recent·Most cited

From Abandoned Scripts to FAIR Community Pipelines: Rescuing Orphan Bioinformatics Workflows with nf-core - Lessons from Light-Sheet Fluorescence Microscopy

Carolin Schwitalla, Luis Kuhn Cuellar, Matthias Hörtenhuber, Niklas Grote, Tatiana Marianne Woller, Irene Lamberti, Benjamin Pavie, Thomas Küstner, Felix A. Kyere, Ian Curtin, Jason L. Stein, Sven Nahnsen

The paper re-engineers an abandoned MATLAB-based image analysis toolkit into a sustainable, FAIR-compliant Nextflow workflow for light-sheet microscopy.

bioRxiv · Aug 11, 2026 · PreprintBioinformatics

A high-performance end-to-end 3D CLEM processing workflow for facilities

Hélène Roberge, Tatiana Marianne Woller, Benjamin Pavie, Julian Hennies, Cecilia de Heus, Lakshmi Edakkandiyil, Nalan Liv, Sebastian Munck

This paper presents an end-to-end 3D CLEM processing pipeline that integrates existing and new tools to streamline analysis, improve reproducibility, and support facility-scale use.

bioRxiv · Mar 16, 2026 · PreprintCell Biology