Author

Isabelle Le Clainche

Université Paris-Saclay

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 4 Genetics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Assay:whole-genome sequencing· 4 Research Focus:variant calling· 3 Research Focus:database / resource· 2 Research Focus:GWAS / association mapping· 2 Organism:plant (other)· 2 Organism:C. elegans· 1 Approach:experimental assay· 1

Frequent Co-Authors

Aurélie BerardiD· 6 shared Damien Daniel HinsingeriD· 6 shared Patricia Faivre RampantiD· 6 shared Aurélie CanaguieriD· 4 shared Javier Belinchon-MorenoiD· 4 shared Nathalie BoissotiD· 4 shared Vincent Rittener-Ruff· 4 shared Jacques LagneliD· 3 shared

Activity by Year

2024-2026 · peak 3/yr

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10 top collaborators · 45 mutual co-author links

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6 shared papersGenomics

Aurélie BerardORCID

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6 papers

Recent·Most cited

Linkage and association mapping coupled with pan-genome analyses of Vat homologs reveal QTLs and alleles for aphid resistance in melon

Javier Belinchon-Moreno, Eva Coindre, Séverine Monnot, Aurélie Berard, Aurélie Canaguier, Isabelle Le Clainche, Pascale Mistral, Karine Leyre, Vincent Rittener-Ruff, Damien Daniel Hinsinger, Patricia Faivre Rampant, Nathalie Boissot

The paper identifies QTLs and Vat homolog alleles associated with resistance to the A. gossypii CUC1 clone in melon using GWAS and pan-genome analyses.

bioRxiv · Sep 10, 2026 · PreprintGenetics

Development and application of SNP markers to facilitate DUS testing in tomato

Mathilde Causse, Frédérique Bitton C, Patricia Faivre Rampant, Renaud Duboscq, Aurélie Berard, C. Jouy, Chiara Delogu, Hedwich Teunissen, Cecile Collonier, Isabelle Le Clainche, Damien Daniel Hinsinger

The paper develops SNP markers for DUS testing in tomato, identifies marker-trait associations, and evaluates their discriminatory power for variety distinction.

bioRxiv · Jun 16, 2026 · PreprintPlant Biology

High-throughput SNP discovery, development and validation of a 30 K target SNP genotyping tool for cultivated flax (Linum usitatissimum) breeding and germplasm characterization

Boris B. Demenou, Christophe P. Pineau, Isabelle Le Clainche, Aurélie Berard, Patricia Faivre Rampant, Damien Daniel Hinsinger

The paper develops and validates a 30K SNP genotyping tool for flax breeding, showing high polymorphism and genotyping accuracy.

bioRxiv · Sep 24, 2025 · PreprintGenomics

Intra-specific NLR allelic diversity and genomic landscape for plant resistance association studies

Javier Belinchon-Moreno, Aurélie Berard, Aurélie Canaguier, Isabelle Le Clainche, Pascale Mistral, Karine Leyre, Vincent Rittener-Ruff, Jacques Lagnel, Damien Daniel Hinsinger, Patricia Faivre Rampant, Nathalie Boissot

The paper reconstructs NLR regions in melon accessions and uses pan-NLRome GWAS to identify resistance genes against Fusarium wilt and zucchini yellow mosaic virus.

bioRxiv · Aug 1, 2025 · PreprintGenomics

Nanopore adaptive sampling to identify the NLR-gene family in melon (Cucumis melo L.)

Javier Belinchon-Moreno, Aurélie Berard, Aurélie Canaguier, Véronique Chovelon, Corinne Cruaud, Stéfan Engelen, Rafael Feriche-Linares, Isabelle Le Clainche, William Marande, Vincent Rittener-Ruff, Jacques Lagnel, Damien Daniel Hinsinger, Nathalie Boissot, Patricia Faivre Rampant

The paper demonstrates Nanopore Adaptive Sampling (NAS) for enriching and reconstructing resistance genes in melon genomes, showing fourfold enrichment and accurate assembly across subspecies.

BMC Genomics · Feb 10, 2025Peer-reviewedGenomics

Nuclear and organelle genome assemblies of five Cucumis melo L. accessions, Ananas, Canton, PI 414723, Vedrantais and Zhimali, belonging to diverse botanical groups

Javier Belinchon-Moreno, Aurélie Berard, Aurélie Canaguier, Isabelle Le Clainche, Vincent Rittener-Ruff, Jacques Lagnel, Damien Daniel Hinsinger, Nathalie Boissot, Patricia Faivre Rampant

The paper presents high-quality genome assemblies for five melon accessions using Oxford Nanopore sequencing, highlighting their genomic diversity and utility for research on disease resistance and breeding.

bioRxiv · Oct 25, 2024 · PreprintGenomics