Stéfan Engelen

The paper demonstrates Nanopore Adaptive Sampling (NAS) for enriching and reconstructing resistance genes in melon genomes, showing fourfold enrichment and accurate assembly across subspecies.

This paper presents a high-quality chromosome-scale genome assembly of bread wheat using long-read sequencing, enhancing research and breeding applications.

BoardION provides real-time monitoring for Oxford Nanopore sequencing devices to improve data quality and experiment optimization.

The paper presents a new long-read assembly of the Brassica napus Darmor-bzh genome using nanopore sequencing, optical and genetic maps, resulting in a highly contiguous and complete reference genome.

This paper develops a field-friendly framework for characterizing coral holobionts using nanopore sequencing and bioinformatics pipelines, revealing reef-scale bacterial networks and host-specific associations.

FORK-seq maps DNA replication at single-molecule resolution in yeast, revealing previously missed initiation and termination events.

The paper identifies histone H2A.Z-driven integration bias of transposable elements towards environmentally responsive genes in Arabidopsis thaliana.

The paper uses nanopore sequencing and a neural network to identify BrdU-labelled DNA tracts in yeast during replication, showing they align with early-firing origins.

The paper compares two African rice species using a pan-genomic approach, finding that the cultivated species has a smaller core-genome and dispensable genome compared to the wild species.