Author

J. A. Alfaro

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

A. I. Nesvizhskii· 1 shared B. Biesaga· 1 shared D. A. Polasky· 1 shared D. L. Earnshaw· 1 shared F. da Veiga Leprevost· 1 shared F. Yu· 1 shared G. Bedran· 1 shared H. Yi· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperImmunology

A. I. Nesvizhskii

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

3D culture of pancreatic cancer cells in vitro recapitulates an aberrant mitochondrial oxidative phosphorylation genotype observed in vivo

J. M. Treherne, K. Kus, M. P. Krzykawski, D. L. Earnshaw, R. Krzykawska, B. Biesaga, M. Statkiewicz, K. Unrug-Bielawska, Z. Sandowska-Markiewicz, M. Mikula, J. A. Alfaro

This study shows that 3D cultures of pancreatic cancer cells better replicate the mitochondrial oxidative phosphorylation genotype seen in vivo compared to 2D cultures.

bioRxiv · Mar 8, 2024 · PreprintCancer Biology

HLA-Glyco: A large-scale interrogation of the glycosylated immunopeptidome

G. Bedran, D. A. Polasky, H. Yi, F. Yu, F. da Veiga Leprevost, J. A. Alfaro, M. Cieslik, A. I. Nesvizhskii

The paper develops a computational workflow for glyco-immunopeptidomics, identifies glycosylated MHC class II peptides, and provides a resource with over 3,400 HLA class II N-glycopeptides.

bioRxiv · Dec 5, 2022 · PreprintImmunology