Author

J. M. Carlson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Animal Behavior & Cognition· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Organism:Drosophila· 3 Approach:experimental assay· 2 Approach:statistical model· 2 Assay:behavioral assay· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1

Frequent Co-Authors

D. A. Sivak· 2 shared E. W. Jones· 2 shared W. B. Ludington· 2 shared A. Aranda-Diaz· 1 shared A. C. Spradling· 1 shared B. Obadia· 1 shared C. Gooley· 1 shared C. Wang· 1 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersMicrobiology

D. A. Sivak

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Large-scale statistical mapping of T-cell receptor β sequences to Human Leukocyte Antigens

H. J. Zahid, R. Taniguchi, P. Ebert, I.-T. Chow, C. Gooley, J. Lv, L. Pisani, M. Rusnak, R. Elyanow, H. Takamatsu, W. Zhou, J. Greissl, H. Robins, J. M. Carlson

The paper maps T-cell receptor β sequences to specific HLA allotypes using population-level TCR repertoire data, enabling accurate HLA imputation and revealing insights into TCR-HLA interactions.

bioRxiv · Apr 1, 2024 · PreprintImmunology

A gut commensal niche regulates stable association of a multispecies microbiota

R. Dodge, E. W. Jones, H. Zhu, B. Obadia, D. J. Martinez, C. Wang, A. Aranda-Diaz, K. Aumiller, Z. Liu, M. Voltolini, E. L. Brodie, K. C. Huang, J. M. Carlson, D. A. Sivak, A. C. Spradling, W. B. Ludington

The study identifies a strain-specific bacterial niche in the Drosophila foregut that stabilizes microbiota composition through spatial and competitive interactions.

bioRxiv · Sep 30, 2021Microbiology

Stochastic microbiome assembly depends on context

E. W. Jones, J. M. Carlson, D. A. Sivak, W. B. Ludington

This paper shows microbiome assembly in Drosophila is stochastic and context-dependent, even under controlled conditions, and develops a method to infer bacterial interactions from colonization data.

bioRxiv · Aug 29, 2021Microbiology

Variation and variability in Drosophila grooming behavior

J. M. Mueller, N. Zhang, J. M. Carlson, J. H. Simpson

This study examines genetic sources of variation and variability in Drosophila grooming behavior, finding that genetic differences lead to distinct phenotypes but not increased individual variability.

bioRxiv · Aug 15, 2020Animal Behavior & Cognition