Author

J. M. Pipas

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioengineering· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Approach:statistical model· 2 Approach:biophysical modeling· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

A. A. McBride· 1 shared A. Chen· 1 shared A. K. Belford· 1 shared A. Pastusiak· 1 shared A. Warburton· 1 shared C. B. Buck· 1 shared C. Bian· 1 shared C. Drummond· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 10 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperCancer Biology

A. A. McBride

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Author profile →

4 papers

Recent·Most cited

High-sensitivity whole-genome recovery of single viral species in environmental samples

L. Chen, A. Chen, X. D. Zhang, M. T. Saenz, H.-S. Han, Y. Xiao, G. Xiao, J. M. Pipas, D. Weitz

This paper develops a method to recover complete viral genomes from environmental samples with high sensitivity, achieving 100% recovery of a spiked-in virus and 99.4% for a larger virus.

bioRxiv · Nov 13, 2023 · PreprintBioengineering

Recurrent Integration of Human Papillomavirus Genomes at Transcriptional Regulatory Hubs

A. Warburton, T. E. Markowitz, J. P. Katz, J. M. Pipas, A. A. McBride

The paper identifies recurrent HPV integration hotspots at transcriptional regulatory hubs in cervical and head and neck cancers, linking them to oncogene expression and carcinogenesis.

npj Genomic Medicine · Nov 30, 2021Peer-reviewedCancer Biology

Stability and detection of nucleic acid from viruses and hosts in mosquito blood meals

M. R. Reddy, C. Drummond, M. E. Gebhardt, M. T. Saenz Robles, G. Carpi, I. Hoyer, A. Pastusiak, D. E. Norris, J. M. Pipas, E. K. Jackson

The paper establishes detection windows for DNA/RNA from human blood and viruses in mosquito blood meals to improve xenosurveillance.

bioRxiv · Mar 17, 2020Microbiology

Identification of Adomavirus Virion Proteins

N. L. Welch, M. J. Tisza, G. J. Starrett, A. K. Belford, D. V. Pastrana, Y.-Y. S. Pang, J. T. Schiller, P. An, P. G. Cantalupo, J. M. Pipas, S. Koda, K. Subramaniam, T. B. Waltzek, C. Bian, Q. Shi, , C. B. Buck

This paper identifies virion proteins of adomaviruses, linking them to adenoviruses and adintoviruses, and suggests a shared evolutionary history among small DNA tumor viruses.

bioRxiv · Mar 4, 2020 · PreprintMicrobiology