Author

J. Pangilinan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Evolutionary Biology· 2 Bioengineering· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 6 Approach:statistical model· 4 Research Focus:cell type annotation· 3 Research Focus:chromatin & epigenetic regulation· 3 Research Focus:gene regulatory network inference· 3 Approach:comparative / phylogenetic analysis· 2 Approach:experimental assay· 2 Organism:Arabidopsis· 1

Frequent Co-Authors

A. Lipzen· 6 shared I. V. Grigoriev· 5 shared B. Henrissat· 4 shared K. LaButti· 4 shared E. Drula· 3 shared K. W. Barry· 3 shared R. Riley· 3 shared S. Miyauchi· 3 shared

Activity by Year

2018-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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6 shared papersMicrobiology

A. Lipzen

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Genome evolution and transcriptome plasticity associated with adaptation to monocot and eudicot plants in Colletotrichum fungi

R. Baroncelli, J. F. Cobo-Diaz, T. Benocci, M. Peng, E. Battaglia, S. Haridas, W. Andreopoulos, K. LaButti, J. Pangilinan, A. Lipzen, M. Koriabine, D. Bauer, G. Le Floch, M. R. Makela, E. Drula, , M. R. Thon

This study analyzes genome and transcriptome data from 30 Colletotrichum species to show evolutionary adaptations to monocot and eudicot hosts, including gene expansion and expression changes.

bioRxiv · Sep 22, 2022 · PreprintMicrobiology

Divergent evolution of early terrestrial fungi reveals the evolution of Mucormycosis pathogenicity factors

Y. Wang, Y. Chang, J. Ortanez, J. F. Pena, D. Carter-House, N. K. Reynolds, M. E. Smith, G. Benny, S. J. Mondo, A. Salamov, A. Lipzen, J. Pangilinan, J. Guo, K. LaButti, W. Andreopolous, , J. E. Stajich

This study investigates the divergent evolution of zygomycete fungi, identifying lineage-specific genomic elements and evolutionary relationships that contribute to Mucormycosis pathogenicity.

bioRxiv · Jun 24, 2022Evolutionary Biology

Genetic determinants of endophytism in the Arabidopsis root mycobiome

F. Mesny, S. Miyauchi, T. Thiergart, B. Pickel, L. Atanasova, M. Karlsson, B. Hüttel, K. W. Barry, S. Haridas, C. Chen, D. Bauer, W. Andreopoulos, J. Pangilinan, K. LaButti, R. Riley, , S. Hacquard

The paper identifies genetic factors associated with endophytism in Arabidopsis root fungi, showing specific gene families linked to aggressive colonization and plant health.

Nature Communications · Dec 10, 2021Peer-reviewedMicrobiology

Characterization of a novel polyextremotolerant fungus, Exophiala viscosa, with insights into its melanin regulation and ecological niche

E. C. Carr, Q. Barton, S. Grambo, C. Renfro, M. T. Sullivan, A. Kuo, J. Pangilinan, A. Lipzen, K. Keymanesh, E. Savage, K. Barry, I. V. Grigoriev, W. R. Riekhof, S. D. Harris

This study characterizes a novel polyextremotolerant fungus, Exophiala viscosa, revealing its metabolic flexibility, abiotic stress tolerance, and melanin production capabilities.

bioRxiv · Dec 3, 2021Microbiology

Evolutionary priming and transition to the ectomycorrhizal habit in an iconic lineage of mushroom-forming fungi: is preadaptation a requirement?

B. P. Looney, S. Miyauchi, E. Morin, P.-E. Courty, A. P. Kohler, E. Lindquist, A. Kuo, K. LaButti, J. Pangilinan, A. Lipzen, R. Riley, W. Andreopoulos, G. He, J. Johnson, M. Nolan, , F. M. Martin

This study identifies genomic features of the transition to ectomycorrhizal habit in Russulaceae fungi, finding gene loss, TE expansion, and secreted protein associations with TE nests.

bioRxiv · Feb 23, 2021 · PreprintEvolutionary Biology

Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass.

S. Miyauchi, A. Rancon, E. Drula, D. Chaduli, A. Favel, S. Grisel, B. Henrissat, I. Herpoël-Gimbert, F. J. Ruiz-Duenas, D. Chevret, M. Hainaut, J. Lin, M. Wang, J. Pangilinan, A. Lipzen, , M.-N. Rosso

This study identifies the oxidative enzyme systems in Polyporus brumalis that enable efficient lignin degradation during wheat straw fermentation.

bioRxiv · Apr 6, 2018Bioengineering