Author

S. Miyauchi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3 Microbiology· 2 Bioengineering· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 4 Organism:Arabidopsis· 3 Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Assay:bulk RNA-seq· 2 Research Focus:chromatin & epigenetic regulation· 2

Frequent Co-Authors

A. Lipzen· 3 shared B. Henrissat· 3 shared J. Pangilinan· 3 shared R. Riley· 3 shared A. Zuccaro· 2 shared E. Drula· 2 shared F. M. Martin· 2 shared G. Langen· 2 shared

Activity by Year

2018-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersMicrobiology

A. Lipzen

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Time-resolved transcriptomics reveal a mechanism of host niche defense: beneficial root endophytes deploy a host-protective antimicrobial GH18-CBM5 chitinase

R. Eichfeld, L. K. Mahdi, C. De Quattro, L. Armbruster, A. B. Endeshaw, S. Miyauchi, M. J. Hellmann, S. Cord-Landwehr, I. Grigoriev, D. Peterson, V. Singan, K. Lail, E. Savage, V. Ng, G. Langen, , A. Zuccaro

This study uses time-resolved transcriptomics to identify a GH18-CBM5 chitinase in Sebacinales fungi that protects plants against the pathogen Bipolaris sorokiniana.

bioRxiv · Dec 29, 2023 · PreprintMicrobiology

Genetic and phosphoproteomic basis of LysM-mediated immune signaling in Marchantia polymorpha highlights conserved elements and new aspect of pattern-triggered immunity in land plants

I. Yotsui, H. Matsui, S. Miyauchi, H. Iwakawa, K. Melkonian, T. Schluter, S. G. Ibanez, T. Kanazawa, Y. Nomura, S. C. Stolze, H.-W. Jeon, S. S. Sugano, M. Shirakawa, R. Nishihama, Y. Ichihashi, , H. Nakagami

This study identifies LysM receptor components and phosphoproteomic regulators of PTI in M. polymorpha, revealing conserved and novel elements of plant immune signaling.

bioRxiv · Dec 28, 2022 · PreprintPlant Biology

Contrasting and conserved roles of NPR pathways in diverged land plant lineages

H.-W. Jeon, H. Iwakawa, S. Naramoto, C. Herrfurth, N. Gutsche, T. Schlueter, J. Kyozuka, S. Miyauchi, I. Feussner, S. Zachgo, H. Nakagami

This study compares NPR pathway functions across diverged land plants, finding conserved and divergent roles in stress responses and transcriptional regulation.

bioRxiv · Jul 19, 2022Plant Biology

Genetic determinants of endophytism in the Arabidopsis root mycobiome

F. Mesny, S. Miyauchi, T. Thiergart, B. Pickel, L. Atanasova, M. Karlsson, B. Hüttel, K. W. Barry, S. Haridas, C. Chen, D. Bauer, W. Andreopoulos, J. Pangilinan, K. LaButti, R. Riley, , S. Hacquard

The paper identifies genetic factors associated with endophytism in Arabidopsis root fungi, showing specific gene families linked to aggressive colonization and plant health.

Nature Communications · Dec 10, 2021Peer-reviewedMicrobiology

The fungal root endophyte Serendipita vermifera displays inter-kingdom synergistic beneficial effects with the microbiota in Arabidopsis thaliana and barley

L. K. Mahdi, S. Miyauchi, C. Uhlmann, R. Garrido-Oter, G. Langen, S. Wawra, Y. Niu, S. Robertson-Albertyn, D. Bulgarelli, J. E. Parker, A. Zuccaro

This study shows that the fungal endophyte Serendipita vermifera synergizes with bacterial microbiota to protect Arabidopsis and barley from pathogens, with benefits dependent on host and microbiota composition.

bioRxiv · Mar 18, 2021Plant Biology

Evolutionary priming and transition to the ectomycorrhizal habit in an iconic lineage of mushroom-forming fungi: is preadaptation a requirement?

B. P. Looney, S. Miyauchi, E. Morin, P.-E. Courty, A. P. Kohler, E. Lindquist, A. Kuo, K. LaButti, J. Pangilinan, A. Lipzen, R. Riley, W. Andreopoulos, G. He, J. Johnson, M. Nolan, , F. M. Martin

This study identifies genomic features of the transition to ectomycorrhizal habit in Russulaceae fungi, finding gene loss, TE expansion, and secreted protein associations with TE nests.

bioRxiv · Feb 23, 2021 · PreprintEvolutionary Biology

Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass.

S. Miyauchi, A. Rancon, E. Drula, D. Chaduli, A. Favel, S. Grisel, B. Henrissat, I. Herpoël-Gimbert, F. J. Ruiz-Duenas, D. Chevret, M. Hainaut, J. Lin, M. Wang, J. Pangilinan, A. Lipzen, , M.-N. Rosso

This study identifies the oxidative enzyme systems in Polyporus brumalis that enable efficient lignin degradation during wheat straw fermentation.

bioRxiv · Apr 6, 2018Bioengineering