Author

J. Soukup

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Cell Biology· 1 Microbiology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Assay:imaging· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

A. Gupta· 1 shared A. Roy· 1 shared C. V. Pastuskovas· 1 shared C. Y. Chabu· 1 shared E. Nohynkova· 1 shared F. Weisz· 1 shared G. Sellamuthu· 1 shared J. Menendez· 1 shared

Activity by Year

2023-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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1 shared paperPlant Biology

A. Gupta

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Imaging Giardia intestinalis cellular organisation using expansion microscopy revealed atypical centrin localisation.

J. Soukup, M. Zelena, F. Weisz, M. Kostelanska, E. Nohynkova, P. Tumova

The paper presents a sample preparation workflow using expansion microscopy to study Giardia intestinalis, revealing atypical centrin localization at basal bodies.

bioRxiv · Jan 8, 2024 · PreprintMicrobiology

A Light sheet fluorescence microscopy and machine learning-based approach to investigate drug and biomarker distribution in whole organs and tumors.

N. Kumar, P. Hrobar, M. Vagenknecht, J. Soukup, N. Patterson, P. Bloomingdale, T. Freshwater, S. Bardehle, R. Peter, R. Mangadu, C. V. Pastuskovas, C. Y. Chabu, M. T. Cancilla

This paper uses light sheet fluorescence microscopy and machine learning to study drug and biomarker distribution in whole organs and tumors, showing improved segmentation accuracy and subcellular resolution.

bioRxiv · Sep 16, 2023 · PreprintCancer Biology

Transcriptomic response in pyroxsulam-resistant and susceptible Bromus sterilis identified three distinct mechanisms of resistance

M. K. Sen, K. Hamouzova, N. Onkokesung, J. Menendez, J. Torra, P. Kosnarova, G. Sellamuthu, A. Gupta, R. Bharati, V. P. Sur, A. Roy, J. Soukup

The paper identifies three resistance mechanisms in pyroxsulam-resistant Bromus sterilis through transcriptomic analysis without ALS mutations.

bioRxiv · Jul 14, 2023 · PreprintPlant Biology

Large Extracellular Vesicles Transfer Higher Levels of Prions and Infect Cell Culture Better than Small Extracellular Vesicles.

J. Soukup, T. Mosko, S. Kereïche, K. Holada

This study compares large and small extracellular vesicles in prion spread, finding that large vesicles carry more prion activity and infect cell cultures more effectively.

bioRxiv · Mar 1, 2023Cell Biology