Author

J. Stegen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 3 Microbiology· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Research Focus:ecology & biodiversity· 4 Assay:metagenomics· 4 Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Assay:metabolomics· 2 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

J. Toyoda· 3 shared L. Renteria· 3 shared R. E. Danczak· 3 shared A. E. Goldman· 2 shared A. Goldman· 2 shared C. T. Resch· 2 shared E. B. Graham· 2 shared J. Wells· 2 shared

Activity by Year

2020-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersEcology

J. Toyoda

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

A functional microbiome catalog crowdsourced from North American rivers

M. A. Borton, B. B. McGivern, K. R. Willi, B. J. Woodcroft, A. C. Mosier, D. M. Singleton, T. Bambakidis, A. C. Pelly, F. Liu, J. N. Edirisinghe, J. P. Faria, I. Leleiwi, R. A. Daly, A. E. Goldman, M. J. Wilkins, , K. C. Wrighton

The paper creates GROWdb, a microbiome database from North American rivers, revealing microbial community structures and functional traits across watersheds.

bioRxiv · Jul 22, 2023 · PreprintMicrobiology

Spatial and temporal metagenomics of river compartments reveals viral community dynamics in an urban impacted stream

J. A. Rodriguez-Ramos, A. Oliverio, M. A. Borton, R. E. Danczak, B. M. Mueller, H. Schulz, J. Ellenbogen, R. M. Flynn, R. A. Daly, L. Schopflin, M. Shaffer, A. Goldman, J. Lewandowski, J. Stegen, K. Wrighton

The paper analyzes spatial and temporal metagenomic data from a wastewater-impacted river to reveal viral and microbial community dynamics and their potential roles in biogeochemical cycles.

bioRxiv · Apr 4, 2023 · PreprintMicrobiology

Metabolic Multireactor: practical considerations for using simple oxygen sensing optodes for high-throughput batch reactor metabolism experiments

M. Kaufman, J. Torgeson, J. Stegen

The paper describes a system for high-throughput microbial metabolism experiments using oxygen sensing optodes, enabling simultaneous measurement of multiple batch reactors with high time-resolution data.

bioRxiv · Mar 28, 2023Biochemistry

Implications of sample treatment on characterization of the riverine environmental metabolome

A. R. Nelson, J. Toyoda, R. K. Chu, N. Tolic, V. Garayburu-Caruso, C. M. Saup, L. Renteria, J. R. Wells, J. Stegen, M. J. Wilkins, R. E. Danczak

The paper evaluates how sample treatment and ionization mode affect the characterization of riverine environmental metabolomes using high-resolution mass spectrometry.

bioRxiv · Sep 2, 2021 · PreprintEcology

Using Community Science to Reveal the Global Chemogeography of River Metabolomes

V. A. Garayburu-Caruso, R. E. Danczak, J. Stegen, L. Renteria, M. MacCall, A. E. Goldman, R. K. Chu, J. Toyoda, C. T. Resch, J. M. Torgeson, J. Wells, S. Fansler, S. Kumar, E. B. Graham

This study uses community science to analyze global river metabolomes, revealing differences between surface water and sediment and significant spatial variation in sediment metabolites.

bioRxiv · Nov 2, 2020Ecology

Carbon limitation leads to thermodynamic regulation of aerobic metabolism

V. Garayburu-Caruso, J. Stegen, H.-S. Song, L. Renteria, J. Wells, W. Garcia, C. T. Resch, A. Goldman, R. Chu, J. Toyoda, E. B. Graham

The paper tests OM thermodynamics as a regulator of aerobic respiration, showing it dominates under carbon limitation and shifts to nitrogen content when carbon is in excess.

bioRxiv · Jan 15, 2020Ecology