Author

John W. S. Brown

James Hutton Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Organism:Arabidopsis· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Runxuan ZhangiD· 3 shared Cristiane P. G. CalixtoiD· 2 shared Nikoleta A. ΤzioutziouiD· 2 shared Wenbin GuoiD· 2 shared Alan L. ArchibaldiD· 1 shared Allan B. JamesiD· 1 shared David W. BurtiD· 1 shared Gordon StepheniD· 1 shared

Activity by Year

2018-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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3 shared papersGenomics

Runxuan ZhangORCID

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Author profile →

3 papers

Recent·Most cited

3D RNA-seq - a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

Wenbin Guo, Nikoleta A. Τzioutziou, Gordon Stephen, Iain Milne, Cristiane P. G. Calixto, Robbie Waugh, John W. S. Brown, Runxuan Zhang

3D RNA-seq provides a user-friendly tool for differential expression, alternative splicing, and transcript usage analysis of RNA-seq data without requiring programming skills.

RNA Biology · Dec 19, 2020Peer-reviewedBioinformatics

Illuminating the dark side of the human transcriptome with TAMA Iso-Seq analysis

Richard I Kuo, Yuanyuan Cheng, Runxuan Zhang, John W. S. Brown, Jacqueline Smith, Alan L. Archibald, David W. Burt

The paper uses TAMA to analyze long-read RNA sequencing data and identifies thousands of potential novel genes while highlighting challenges in RNA preparation and data processing.

BMC Genomics · Oct 30, 2020Peer-reviewedGenomics

Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

Cristiane P. G. Calixto, Wenbin Guo, Allan B. James, Nikoleta A. Τzioutziou, Juan Carlos Entizne, Paige E. Panter, Heather Knight, Hugh G. Nimmo, Runxuan Zhang, John W. S. Brown

The paper identifies rapid and dynamic alternative splicing events in Arabidopsis during cold response, showing their distinct regulatory roles from transcription.

The Plant Cell · May 15, 2018Peer-reviewedGenomics