Author

Juan Carlos Entizne

James Hutton InstituteORCID 0000-0003-0106-2855Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Organism:Arabidopsis· 3 Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 2 Research Focus:cell-cell communication· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Runxuan ZhangiD· 3 shared Cristiane P. G. CalixtoiD· 2 shared John W.S. Brown· 2 shared Nikoleta A. ΤzioutziouiD· 2 shared Wenbin GuoiD· 2 shared Allan B. JamesiD· 1 shared Babita SinghiD· 1 shared Craig G. SimpsoniD· 1 shared

Activity by Year

2018-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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3 shared papersBioinformatics

Runxuan ZhangORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 15, 2020

TranSuite: a software suite for accurate translation and characterization of transcripts

Juan Carlos Entizne, Wenbin Guo, Cristiane P. G. Calixto…·John W.S. Brown

TranSuite improves transcript translation accuracy by identifying correct ORFs and distinguishing between protein-coding and NMD substrates in Arabidopsis transcriptomes.

21 citations

ArabidopsisDNA methylation

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Molecular BiologyThe Plant CellPeer-reviewedJul 14, 2020

Nonsense mediated RNA decay factor UPF1 is critical for post-transcriptional and translational gene regulation in Arabidopsis

Vivek K. Raxwal, Craig G. Simpson, Jiradet Gloggnitzer…·Karel Říha

This study shows that UPF1 is essential for post-transcriptional and translational regulation in Arabidopsis, affecting alternative splicing, translation, and immune receptor activation.

63 citations

Arabidopsisbulk RNA-seq

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GenomicsThe Plant CellPeer-reviewedMay 15, 2018

Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

Cristiane P. G. Calixto, Wenbin Guo, Allan B. James…·John W. S. Brown

The paper identifies rapid and dynamic alternative splicing events in Arabidopsis during cold response, showing their distinct regulatory roles from transcription.

301 citationstop 1%

Arabidopsisbulk RNA-seq

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BioinformaticsGenome biologyPeer-reviewedMar 23, 2018

SUPPA2 provides fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions

Juan L. Trincado, Juan Carlos Entizne, Gerald Hysenaj…·Eduardo Eyras

707 citationstop 1%

bulk RNA-seqstatistical model

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