Cristiane P. G. Calixto

3D RNA-seq - a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

3D RNA-seq provides a user-friendly tool for differential expression, alternative splicing, and transcript usage analysis of RNA-seq data without requiring programming skills.

TranSuite: a software suite for accurate translation and characterization of transcripts

TranSuite improves transcript translation accuracy by identifying correct ORFs and distinguishing between protein-coding and NMD substrates in Arabidopsis transcriptomes.

Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

The paper identifies rapid and dynamic alternative splicing events in Arabidopsis during cold response, showing their distinct regulatory roles from transcription.