Author

Nikoleta A. Τzioutziou

James Hutton InstituteORCID 0000-0002-5041-0513Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:Arabidopsis· 2 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Cristiane P. G. CalixtoiD· 3 shared Runxuan ZhangiD· 3 shared John W. S. Brown· 2 shared Juan Carlos EntizneiD· 2 shared Wenbin GuoiD· 2 shared Allan B. JamesiD· 1 shared Gordon StepheniD· 1 shared Heather KnightiD· 1 shared

Activity by Year

2018-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersBioinformatics

Cristiane P. G. CalixtoORCID

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3 papers

Recent·Most cited

BioinformaticsRNA BiologyPeer-reviewedDec 19, 2020

3D RNA-seq - a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

Wenbin Guo, Nikoleta A. Τzioutziou, Gordon Stephen…·Runxuan Zhang

3D RNA-seq provides a user-friendly tool for differential expression, alternative splicing, and transcript usage analysis of RNA-seq data without requiring programming skills.

140 citationstop 3%

bulk RNA-seqstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintDec 15, 2020

TranSuite: a software suite for accurate translation and characterization of transcripts

Juan Carlos Entizne, Wenbin Guo, Cristiane P. G. Calixto…·John W.S. Brown

TranSuite improves transcript translation accuracy by identifying correct ORFs and distinguishing between protein-coding and NMD substrates in Arabidopsis transcriptomes.

21 citations

ArabidopsisDNA methylation

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GenomicsThe Plant CellPeer-reviewedMay 15, 2018

Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

Cristiane P. G. Calixto, Wenbin Guo, Allan B. James…·John W. S. Brown

The paper identifies rapid and dynamic alternative splicing events in Arabidopsis during cold response, showing their distinct regulatory roles from transcription.

301 citationstop 1%

Arabidopsisbulk RNA-seq

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