Author

Jonathan A. Eisen

Primary ORCID profile (0000-0002-0159-2197 · 9 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Jonathan A. EiseniD9 papers · University of California, Davis

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:experimental assay· 1

Frequent Co-Authors

Alex Williams· 1 shared C.Y.M. Lau· 1 shared Duane Moser· 1 shared Eric D. Becraft· 1 shared Filipa Godoy Vitorino· 1 shared Jessica Jarett· 1 shared Joseph Brown· 1 shared Julia M. Brown· 1 shared

Activity by Year

2015-2017 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Alex Williams

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2 papers

Recent·Most cited

Solagigasbacteria: Lone genomic giants among the uncultured bacterial phyla

Eric D. Becraft, Tanja Woyke, Jessica Jarett, Natalia Ivanova, Filipa Godoy Vitorino, Nicole Poulton, Julia M. Brown, Joseph Brown, C.Y.M. Lau, Tullis Onstott, Jonathan A. Eisen, Duane Moser, Ramunas Stepanauskas

The paper identifies Solagigasbacteria as a newly named candidate phylum with large genomes and versatile metabolism, found in diverse terrestrial ecosystems.

bioRxiv · Aug 15, 2017 · PreprintMicrobiology

Automated and accurate estimation of gene family abundance from shotgun metagenomes

Stephen Nayfach, Patrick H. Bradley, Stacia K. Wyman, Timothy J. Laurent, Alex Williams, Jonathan A. Eisen, Katherine S. Pollard, Thomas J. Sharpton

This paper develops ShotMAP, a metagenome annotation pipeline, and evaluates its performance on marine and gut microbiome data, finding functional differences in Crohn's disease patients.

bioRxiv · Jul 10, 2015Bioinformatics