Author

Joshua Kaye

Garvan Institute of Medical Research

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Cell Biology· 1

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:scRNA-seq· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Andrew Kim· 1 shared Arteen ArzivianiD· 1 shared Ashraful HaqueiD· 1 shared Cameron WilliamsiD· 1 shared Craig HaiferiD· 1 shared Drew R. NeaviniD· 1 shared Ekaterina N. SviriaevaiD· 1 shared F C ZhangiD· 1 shared

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2026-2026 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperCell Biology

Andrew Kim

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1 paper

Recent·Most cited

The primary sclerosing cholangitis and ulcerative colitis colonic mucosa defined through paired microbial and single-cell RNA sequencing

Jacqueline L.E. Tearle, Ekaterina N. Sviriaeva, F C Zhang, Katherine Jackson, Joshua Kaye, Pedram Tavakoli, Sabrina Koentgen, Joanna Warren, Raymond R. Liang, Pratibha Malhotra, Cameron Williams, Ashraful Haque, Arteen Arzivian, Kotlapati Sudhakar, Drew R. Neavin, , Kylie Renee James

This study identifies distinct cellular and microbial profiles in PSC-UC and UC patients using single-cell and spatial transcriptomics, revealing shared and unique inflammatory mechanisms.

Nature Communications · Jul 7, 2026Peer-reviewedCell Biology