Author

Kotlapati Sudhakar

Garvan Institute of Medical Research

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:scRNA-seq· 2 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Gist F. CroftiD· 2 shared Joseph E. PowelliD· 2 shared Niranjan SawarkariD· 2 shared Aaron ZhongiD· 1 shared Alessandro FiorenzanoiD· 1 shared Alessandro RosaiD· 1 shared Alexander G. IoannidisiD· 1 shared Andrea CorsinottiiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersDevelopmental Biology

Gist F. CroftORCID

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Author profile →

3 papers

Recent·Most cited

The primary sclerosing cholangitis and ulcerative colitis colonic mucosa defined through paired microbial and single-cell RNA sequencing

Jacqueline L.E. Tearle, Ekaterina N. Sviriaeva, F C Zhang, Katherine Jackson, Joshua Kaye, Pedram Tavakoli, Sabrina Koentgen, Joanna Warren, Raymond R. Liang, Pratibha Malhotra, Cameron Williams, Ashraful Haque, Arteen Arzivian, Kotlapati Sudhakar, Drew R. Neavin, , Kylie Renee James

This study identifies distinct cellular and microbial profiles in PSC-UC and UC patients using single-cell and spatial transcriptomics, revealing shared and unique inflammatory mechanisms.

Nature Communications · Jul 7, 2026Peer-reviewedCell Biology

A human developmental and adult brain atlas benchmarks dopaminergic stem cell models and cell therapy candidates

Vittoria Dickinson Bocchi, Ken To, Leslie Weber, Paul Zumbo, Lisa Kim, Iwasaki Yuko Shida, Donghe Yang, Petter Storm, Alessandro Fiorenzano, Edoardo Sozzi, James O.S. Hackland, Chuan Xu, Tae Wan Kim, Fani Memi, Nicola J. Drummond, , Lorenz Studer

The paper benchmarks dopaminergic stem cell models and cell therapy candidates using a human brain atlas to identify off-target populations and lineage plasticity.

bioRxiv · Jun 22, 2026 · PreprintDevelopmental Biology

The diploid reference genome of a human embryonic stem cell line

Ivana Pačar, Matteo Tommaso Ungaro, Ying Chen, Hamza Dallali, Jack A Medico, Prajna Hebbar, Mark Diekhans, Elena Di Tommaso, Margarita Geleta, Patricia P. Chan, Todd M. Lowe, Jennifer Ballaco, Nivesh Jain, Francine Ackerman, Michela Mochi, , Simona Giunta

The paper presents the first telomere-to-telomere diploid reference genome of the human embryonic stem cell line H9, revealing genomic features and ancestry.

bioRxiv · Mar 30, 2026 · PreprintGenomics