Author

Joy Arakaki

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:fluorescence / live-cell microscopy· 1 Organism:human· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Amber PhaniD· 1 shared Benjamin MorrisiD· 1 shared Brock RobertsiD· 1 shared Caroline HookwayiD· 1 shared Chamari S. WijesooriyaiD· 1 shared Chantelle L. LeveilleiD· 1 shared Clare Ruth GamliniD· 1 shared Ehssan NazockdastiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBiophysics

Amber PhanORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

Dynamics of ML-based Morphological Features Indicate a Shear Stress-Dependent Bifurcation of hiPSC-Derived Endothelial Cell States

Erin Angelini, Chantelle L. Leveille, Serge E. Parent, Rebecca J. Zaunbrecher, Tiffany Barszczewski, Julie C. Dixon, Fatwir S. Mohammed, Benjamin Morris, Jessica S. Yu, Joy Arakaki, Renske J. Dupar, Jacqueline H. Edmonds, Erik A. Ehlers, Clare Ruth Gamlin, Maxwell J. Hedayati, , Matheus Palhares Viana

The paper uses ML to analyze morphological dynamics of hiPSC-derived endothelial cells under shear stress, identifying a bifurcation between two stable cell states.

bioRxiv · Jul 11, 2026 · PreprintBiophysics