Author

K. Chowdhary

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Immunology· 5

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 4 Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:host-pathogen & immune response· 2 Assay:ATAC-seq· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

C. Benoist· 5 shared D. Mathis· 4 shared J. Leon· 4 shared B. Vijaykumar· 2 shared D. A. Michelson· 2 shared D. Ramanan· 2 shared L. Yang· 2 shared S. Galvan-Pena· 2 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

5 shared papersImmunology

C. Benoist

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

An interwoven network of transcription factors, with divergent influences from FoxP3, underlies Treg diversity

K. Chowdhary, J. Leon, D. Ramanan, D. Mathis, C. Benoist

The paper defines the Treg regulatory network using single-cell chromatin accessibility and machine learning, revealing FoxP3's limited role in shaping Treg diversity.

bioRxiv · May 18, 2023Immunology

Homeostatic, repertoire and transcriptional relationships between colon T regulatory cell subsets

D. Ramanan, K. Chowdhary, S. M. Candeias, M. Sassone-Corsi, D. Mathis, C. Benoist

The paper investigates relationships between colon T regulatory cell subsets, finding that their phenotypes are influenced by tissue-specific cues rather than their differentiation origin.

bioRxiv · May 17, 2023Immunology

FoxP3 associates with enhancer-promoter loopsto regulate Treg-specific gene expression

R. N. Ramirez, K. Chowdhary, J. Leon, D. Mathis, C. Benoist

This study identifies FoxP3's role in Treg cell identity by showing its association with enhancer-promoter loops and its correlation with heightened enhancer-promoter cross-talk.

bioRxiv · Nov 12, 2021 · PreprintImmunology

A virus-specific monocyte inflammatory phenotype is induced by SARS-CoV2 at the immune-epithelial interface

J. Leon, D. A. Michelson, J. Olejnik, K. Chowdhary, H. S. Oh, A. J. Hume, S. Galvan-Pena, Y. Zhu, F. Chen, B. Vijaykumar, L. Yang, E. Crestani, L. M. Yonker, D. M. Knipe, E. Muhlberger, C. Benoist

The paper investigates SARS-CoV2-induced inflammatory responses in monocytes using in vitro co-cultures, identifying a virus-specific gene cluster distinct from other viruses.

bioRxiv · Sep 29, 2021 · PreprintImmunology

Profound Treg perturbations correlate with COVID-19 severity

S. Galvan-Pena, J. Leon, K. Chowdhary, D. A. Michelson, B. Vijaykumar, L. Yang, A. Magnuson, Z. Manickas-Hill, A. Piechocka-Trocha, D. P. Worrall, K. E. Hall, M. Ghebremichael, B. D. Walker, J. Z. Li, X. G. Yu, , C. Benoist

The paper identifies Treg cell perturbations in severe COVID-19 patients, showing increased FoxP3 levels and pro-inflammatory traits linked to disease severity.

bioRxiv · Dec 11, 2020Immunology