Author

K. D. Seed

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Organism:bacteria (other)· 3 Research Focus:cell type annotation· 2 Assay:DNA methylation· 2 Research Focus:host-pathogen & immune response· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. Angermeyer· 2 shared D. T. Dunham· 2 shared A. C. McKitterick· 1 shared A. E. Devoto· 1 shared B. C. Thomas· 1 shared C. M. Boyd· 1 shared D. V. Singh· 1 shared E. A. Archie· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 11 mutual co-author links

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2 shared papersMicrobiology

A. Angermeyer

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5 papers

Recent·Most cited

Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae

Y. Rakibova, D. T. Dunham, K. D. Seed, L. Freddolino

The paper shows that H-NS and TsrA regulate horizontally acquired elements in a clinical isolate of V. cholerae, with TsrA modulating H-NS activity and independently affecting gene expression.

bioRxiv · Dec 30, 2023 · PreprintMicrobiology

A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids

C. M. Boyd, S. Subramanian, D. T. Dunham, K. N. Parent, K. D. Seed

This study identifies TcaP as a protein that remodels phage ICP1 capsids into smaller structures, enhancing PLE satellite transduction and inhibiting ICP1.

bioRxiv · Mar 1, 2023 · PreprintMicrobiology

Temporal Shifts in Antibiotic Resistance Elements Govern Virus-Pathogen Conflicts

K. LeGault, S. G. Hays, A. Angermeyer, A. C. McKitterick, F.-t. Johura, M. Sultana, M. Alam, K. D. Seed

The paper shows that fluctuations in SXT ICEs govern Vibrio cholerae susceptibility to phages in clinical samples, with phage counter-adaptation and SXT ICE dissemination observed.

bioRxiv · Dec 16, 2020Microbiology

Megaphage infect Prevotella and variants are widespread in gut microbiomes

A. E. Devoto, J. M. Santini, M. R. Olm, K. Anantharaman, P. Munk, J. Tung, E. A. Archie, P. J. Turnbaugh, K. D. Seed, R. Blekhman, F. M. Aarestrup, B. C. Thomas, J. F. Banfield

The paper identifies large phage (Lak phage) in gut microbiomes that infect Prevotella and are widespread, especially in developing-world individuals.

bioRxiv · Jun 27, 2018Microbiology

Analysis of 19 Highly Conserved Vibrio cholerae Bacteriophages Isolated from Environmental and Patient Sources Over a Twelve-Year Period

A. Angermeyer, M. M. Das, D. V. Singh, K. D. Seed

The paper analyzes 19 ICP1 bacteriophage isolates from 2001-2012 to reveal their genomic conservation and identify a CRISPR-Cas system.

bioRxiv · May 2, 2018Microbiology