K. Gruden

Evidence based Unification of poTato gene models with UniTato collaborative genome browser

The paper unifies potato gene models using an Apollo web server and provides a collaborative genome browser for annotation updates.

Stress Knowledge Map: A knowledge graph resource for systems biology analysis of plant stress responses

The paper introduces Stress Knowledge Map, a resource with two knowledge graphs for plant stress responses, and demonstrates its use in hypothesis generation and analysis.

Identification and characterisation of Planococcus citri cis- and trans-isoprenyl diphosphate synthase genes, supported by short- and long-read transcriptome data

This study identifies and characterizes IDS genes in Planococcus citri using transcriptome data, revealing their role in producing irregular monoterpenes and potential for biotechnological applications.

A mini-TGA protein, lacking a functional DNA-binding domain, modulates gene expression through heterogeneous association with transcription factors

This study shows that a truncated TGA protein, lacking a DNA-binding domain, modulates gene expression by interacting with other TGA proteins and activating immune-related genes.

Chloroplast redox state changes indicate cell-to-cell signalling during the hypersensitive response

The paper investigates chloroplast redox state and stromule formation during the hypersensitive response in potato plants, linking them to SA signaling and cell-to-cell communication.

Major orchestration of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine

This study identifies Subgroup 2 R2R3-MYBs as key regulators of the stilbenoid pathway in grapevine by integrating DAP-Seq and co-expression networks.

Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato

The paper merges and curates gene models and generates cultivar-specific and pan-transcriptomes for tetraploid potato to explore genetic diversity.

Validating the potential of double-stranded RNA targeting Colorado potato beetle mesh gene in laboratory and field trials

This study evaluates dsRNA targeting the CPB mesh gene in lab and field trials, showing it reduces larval survival and is as effective as spinosad insecticide.

Spatial accumulation of salicylic acid is regulated by RBOHD in potato immunity against viruses

The paper investigates how RBOHD regulates spatial salicylic acid accumulation in potato immunity against viruses, showing its role in restricting virus spread.

Salicylic acid perturbs sRNA-gibberellin regulatory network in immune response of potato to Potato virus Y infection

The paper identifies a salicylic acid-dependent sRNA-gibberellin regulatory network in potato's immune response to Potato virus Y infection, linking sRNA responses to disease severity and developmental signaling.