Author

K. S. Gaonkar

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Cancer Biology· 3

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:whole-genome sequencing· 2 Assay:clinical cohort / trial· 1 Approach:deep learning· 1

Frequent Co-Authors

J. L. Rokita· 3 shared A. C. Resnick· 2 shared A. J. Waanders· 2 shared H. Ijaz· 2 shared K. A. Cole· 2 shared P. B. Storm· 2 shared P. Raman· 2 shared S. J. Diskin· 2 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersCancer Biology

J. L. Rokita

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3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintAug 5, 2022

ALT in Pediatric High-Grade Gliomas Can Occur without ATRX Mutation and is Enriched in Patients with Pathogenic Germline MMR Variants

J. L. Stundon, H. Ijaz, K. S. Gaonkar…·K. A. Cole

This paper identifies ALT in pediatric high-grade gliomas without ATRX mutations and links it to germline MMR variants.

DOI 10.1101/2022.08.05.502870

humanwhole-genome sequencing

𝕏 PostBluesky

Cancer BiologybioRxivPreprintFeb 12, 2020

Single-cell transcriptomic profile reveals macrophage heterogeneity in medulloblastoma and their treatment-dependent recruitment

M. T. Dang, M. Gonzalez, K. S. Gaonkar…·M. Haldar

The paper uses single-cell and bulk RNA sequencing to study macrophage heterogeneity in medulloblastoma and shows differential recruitment with targeted vs. radiation therapy.

DOI 10.1101/2020.02.12.945642

𝕏 PostBluesky

Cancer BiologybioRxivMay 31, 2019

Pediatric High Grade Glioma Resources From the Children’s Brain Tumor Tissue Consortium (CBTTC) and Pediatric Brain Tumor Atlas (PBTA)

H. Ijaz, M. P. Koptyra, K. S. Gaonkar…·K. A. Cole

This paper describes a resource of pediatric high grade glioma (pHGG) data and biospecimens from the CBTTC and PBTA, including genomic, clinical, and imaging data, along with cell lines and tissue microarrays.

DOI 10.1093/neuonc/noz192

humanbulk RNA-seq

𝕏 PostBluesky