Author

Katherine Nguyen

University of California San DiegoPrimary ORCID profile (0000-0002-8620-8616 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Katherine NguyeniD1 paper · University of California San Diego

Biology Disciplines

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Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1 Approach:experimental assay· 1 Assay:scATAC-seq· 1 Assay:scRNA-seq· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alex E DeyanoviD· 1 shared Amy Westermann· 1 shared An Q DinhiD· 1 shared Andie M DeTranaltesiD· 1 shared Andrea E. OchoaiD· 1 shared Ashleigh MilleriD· 1 shared Ashley G. Asamoah· 1 shared Blake HansoniD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Alex E DeyanovORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Clinical and Genomic Characterization of Recalcitrant Enterococcal Bacteremia: A Multicenter Prospective Cohort Study (VENOUS)

Shelby R. Simar, Truc Thanh Tran, Kirsten Rydell, Rachel Atterstrom, Pranoti V. Sahasrabhojane, An Q Dinh, Marissa G Schettino, Haley Slanis, Alex E Deyanov, Andie M DeTranaltes, Dierdre B. Axell‐House, William R. Miller, Jose Manuel Munita, David Tobys, Harald Seifert, , César A. Arias

The paper characterizes recalcitrant enterococcal bacteremia through clinical and genomic analysis, finding species-specific genetic adaptations in persistent infections.

The Journal of Infectious Diseases · Jul 6, 2025Peer-reviewedGenomics

Multi-lineage transcriptional and cell communication signatures define evolving personalized mechanisms that initiate and perpetuate rheumatoid arthritis

Cong Liu, Z. Audrey Wang, Edward B. Prideaux, David L. Boyle, Katherine Nguyen, Vlad Tsaltskan, Amy Westermann, Andrea E. Ochoa, Kevin D. Deane, Marie L. Feser, Mary Kristen Demoruelle, Kristine A. Kuhn, Vernon Michael Holers, Fan Zhang, Ashley G. Asamoah, , Wei Wang

The paper identifies shared transcriptional and cell communication signatures in RA patients and at-risk individuals, showing how multiple pathogenic mechanisms contribute to disease initiation and progression.

bioRxiv · Feb 8, 2025 · PreprintSystems Biology