Author

Katie Podshivalova

Calico Life Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:C. elegans· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Organism:human· 1

Frequent Co-Authors

Cynthia J. KenyoniD· 3 shared Antoine E. RouxiD· 1 shared Arben NaceiD· 1 shared Austin E.Y.T. LefebvreiD· 1 shared David G. HendricksoniD· 1 shared David R. KelleyiD· 1 shared Emilie Katz· 1 shared Fiona Lan· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersPathology

Cynthia J. KenyonORCID

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3 papers

Recent·Most cited

PathologybioRxivPreprintMay 4, 2026

Imageomics defines granular morphological changes of human skin with age and reveals a rejuvenating effect of xenografting

Austin E.Y.T. Lefebvre, Ying Zheng, Ruifeng Yang…·George Cotsarelis

The paper quantifies age-related morphological changes in human skin using imageomics and shows xenografting induces rejuvenation-like changes regardless of host age.

DOI 10.64898/2026.04.29.721704

humanimaging

𝕏 PostBluesky

GenomicsCell ReportsPeer-reviewedAug 1, 2023

The complete cell atlas of an aging multicellular organism

Antoine E. Roux, Han Yuan, Katie Podshivalova…·David R. Kelley

This paper creates a single-cell atlas of aging in C. elegans, revealing cell-type specific aging patterns and identifying transcription factors that regulate aging rates.

110 citationstop 2%

C. elegansscRNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJun 25, 2019

A resource for analyzing C. elegans’ gene expression data using transcriptional gene modules and module-weighted annotations

Michael P. Cary, Katie Podshivalova, Cynthia J. Kenyon

The paper defines 209 gene modules for C. elegans using DEXICA and shows they improve functional interpretation of gene expression data.

DOI 10.1101/678482

C. elegansbulk RNA-seq

𝕏 PostBluesky