Author

Kazumi Abe

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa 277-8561, Japan.;

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1

Frequent Co-Authors

Akihide YoshimiiD· 1 shared Akinobu MatsumotoiD· 1 shared Alessandro BonettiiD· 1 shared Annika Busch· 1 shared Anton KratziD· 1 shared Asmaa M. ElfikyiD· 1 shared Asta BlažytėiD· 1 shared Atsushi HatanoiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperMolecular Biology

Akihide YoshimiORCID

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Author profile →

3 papers

Recent·Most cited

Physiological mapping and prediction reveal stress-responsive translation initiation landscapes

Kazuya Ichihara, Taichi Shiraishi, Haruhiko Morita, Chisa Shiraishi, Mina Hirata, Naoto Yamashiki, Selena Setsu, Kotaro Tsuboyama, Atsushi Hatano, Serina Tokita, Emi Mishiro-Sato, Ayako Sakamoto, Takuhiro Ito, Kazumi Abe, Masahide Seki, , Akinobu Matsumoto

This study introduces TISCA2 and IncepTIS to map and predict stress-responsive translation initiation sites, revealing tissue-specific patterns and enabling engineered mRNA 5' leaders.

bioRxiv · Nov 5, 2026 · PreprintMolecular Biology

Recombination of repeat elements generates somatic complexity in human genomes.

Giovanni Pascarella, Chung-Chau Hon, Kosuke Hashimoto, Annika Busch, Joachim Luginbühl, Callum Parr, Wing Hin Yip, Kazumi Abe, Anton Kratz, Alessandro Bonetti, Federico Agostini, Jessica Severin, Shigeo Murayama, Yutaka Suzuki, Stefano Gustincich, , Piero Carninci

The paper investigates somatic recombination of Alu and L1 repeat elements in human genomes, finding tissue-specific patterns and links to neurodegenerative diseases.

Cell · Jul 25, 2022Peer-reviewedGenomics

Complete genome sequence and analysis of nine Egyptian females with clinical information from different geographic regions in Egypt

Mahmoud ElHefnawi, Elsayed Hegazy, Asmaa M. Elfiky, Yeonsu Jeon, Sungwon Jeon, Jong Bhak, Fateheya Mohamed Metwally, Sumio Sugano, Terumi Horiuchi, Kazumi Abe, Asta Blažytė

The paper reports whole-genome sequences of nine Egyptian females with clinical data, identifying SNPs and mtDNA mutations associated with obesity and CPEO, and analyzing genetic admixture patterns.

Gene · Oct 27, 2020Peer-reviewedBioinformatics