Author

Annika Busch

RIKEN Center for Integrative Medical Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:long-read sequencing· 2 Research Focus:benchmarking· 1 Assay:CUT&Tag· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alessandro BonettiiD· 2 shared Jessica SeveriniD· 2 shared Martin C. FrithiD· 2 shared Piero CarninciiD· 2 shared Adam BaliciD· 1 shared Ahmad M. N. Alhendi· 1 shared Ailsa J Carlisle· 1 shared Akira HasegawaiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Alessandro BonettiORCID

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2 papers

Recent·Most cited

Recombination of repeat elements generates somatic complexity in human genomes.

Giovanni Pascarella, Chung-Chau Hon, Kosuke Hashimoto, Annika Busch, Joachim Luginbühl, Callum Parr, Wing Hin Yip, Kazumi Abe, Anton Kratz, Alessandro Bonetti, Federico Agostini, Jessica Severin, Shigeo Murayama, Yutaka Suzuki, Stefano Gustincich, , Piero Carninci

The paper investigates somatic recombination of Alu and L1 repeat elements in human genomes, finding tissue-specific patterns and links to neurodegenerative diseases.

Cell · Jul 25, 2022Peer-reviewedGenomics

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.

Mathys Grapotte, Manu Saraswat, Chloé Bessière, Christophe Menichelli, Jordan A. Ramilowski, Jessica Severin, Yoshihide Hayashizaki, Masayoshi Itoh, Michihira Tagami, Mitsuyoshi Murata, Miki Kojima-Ishiyama, Shohei Noma, Shuhei Noguchi, Takeya Kasukawa, Akira Hasegawa, , Lothar C. Dieterich

The paper identifies widespread transcription initiation at microsatellites across species and develops deep learning models to predict STR-associated transcription and its impact on disease variants.

Nature Communications · Jun 2, 2021Peer-reviewedGenomics