Author

Kazuya Nishimura

D3 Center, The University of Osaka

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Biophysics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Assay:electronic health records· 1 Research Focus:gene regulatory network inference· 1 Assay:imaging· 1

Frequent Co-Authors

Akio WanakaiD· 1 shared David G. PriestiD· 1 shared Fumiko ChiwakiiD· 1 shared Haruka HiroseiD· 1 shared Hiroyuki ManoiD· 1 shared Kota ItahashiiD· 1 shared Kouko TatsumiiD· 1 shared Latiefa KamarulzamaniD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperNeuroscience

Akio WanakaORCID

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3 papers

Recent·Most cited

Probabilistic coupling of cellular and microenvironmental heterogeneity by masked self-supervised learning

Yasuhiro Kojima, Yosuke Tanaka, Haruka Hirose, Fumiko Chiwaki, Kazuya Nishimura, Shuto Hayashi, Kota Itahashi, Masato Ishikawa, Teppei Shimamura, Hiroyuki Mano

Mievformer uses masked self-supervised learning to model microenvironmental and cellular heterogeneity in spatial transcriptomics data, outperforming existing methods in niche clustering and real dataset analysis.

bioRxiv · Apr 24, 2026 · PreprintBioinformatics

PISA: versatile microscope for 3D single molecule light sheet imaging

Yuichi Taniguchi, Kazuya Nishimura, Yamato Yoshida, Sooyeon Kim, Latiefa Kamarulzaman, David G. Priest, Masae Ohno

PISA enables 3D single molecule light sheet imaging of coverslip-mounted samples with high-throughput capabilities and improved sensitivity for biochemical assays.

bioRxiv · Dec 5, 2024 · PreprintBiophysics

Selective and controlled myelin formation by individual interfascicular oligodendrocytes in the mouse corpus callosum

Tatsuhide Tanaka, Nobuhiko Ohno, Yasuyuki Osanai, Sei Saitoh, Truc Quynh Thai, Kazuya Nishimura, Takeaki Shinjo, Shoko Takemura, Kouko Tatsumi, Akio Wanaka

This study reveals that individual interfascicular oligodendrocytes selectively myelinate distant axons with consistent thicknesses and that adjacent sheaths show correlated thicknesses.

Glia · Jun 24, 2021Peer-reviewedNeuroscience