Author

Fumiko Chiwaki

National Cancer Center Research InstituteORCID 0000-0002-0914-9157Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Organism:mouse· 1

Frequent Co-Authors

Chie Kudo-Saito· 1 shared Haruka HiroseiD· 1 shared Hiroki Sasaki· 1 shared Hiroshi TanookaiD· 1 shared Hiroyuki ManoiD· 1 shared Kazuya Nishimura· 1 shared Kota ItahashiiD· 1 shared Kouichi Tatsumi· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperCancer Biology

Chie Kudo-Saito

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 24, 2026

Probabilistic coupling of cellular and microenvironmental heterogeneity by masked self-supervised learning

Yasuhiro Kojima, Yosuke Tanaka, Haruka Hirose…·Hiroyuki Mano

Mievformer uses masked self-supervised learning to model microenvironmental and cellular heterogeneity in spatial transcriptomics data, outperforming existing methods in niche clustering and real dataset analysis.

DOI 10.64898/2026.04.21.719876

spatial transcriptomicstransformer / foundation model

𝕏 PostBluesky

Cancer BiologyPLoS ONEPeer-reviewedApr 24, 2026

Curability Difference between Autochthonous Mouse Tumors and Their Transplants in Association with Immune Gene Expression

Hiroshi Tanooka, Chie Kudo-Saito, Fumiko Chiwaki…·Takahiro Ochiya

The paper compares immune gene expression in autochthonous mouse tumors and their transplants, finding differences in curability linked to immune markers.

DOI 10.1371/journal.pone.0338289

mousebulk RNA-seq

𝕏 PostBluesky