Author

Kelcie Pletch

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:genome assembly· 2 Assay:Hi-C· 2 Organism:mouse· 2 Research Focus:deconvolution· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:rat· 1

Frequent Co-Authors

Arina D. OmeriD· 2 shared Cynthia Pérez EstradaiD· 2 shared Erez Lieberman AideniD· 2 shared Joseph P. Flanagan· 2 shared Muhammad S. ShamimiD· 2 shared Neva C. DurandiD· 2 shared Olga DudchenkoiD· 2 shared Sanjit Singh BatraiD· 2 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Arina D. OmerORCID

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2 papers

Recent·Most cited

Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample

Marcela Sandoval‐Velasco, Olga Dudchenko, Juan Antonio Rodríguez, Cynthia Pérez Estrada, Marianne Dehasque, Claudia Fontsere, Sarah S. T. Mak, Ruqayya Khan, Vinícius G. Contessoto, Antonio Bento de Oliveira Junior, Achyuth Kalluchi, Bernardo J. Zubillaga Herrera, Jiyun Jeong, Renata P. Roy, Ishawnia Christopher, , Erez Lieberman Aiden

This paper reports the 3D genome architecture of a 52,000-year-old woolly mammoth using a novel method, revealing conserved epigenetic features across elephantids.

Cell · Jul 1, 2024Peer-reviewedGenomics

The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000

Olga Dudchenko, Muhammad S. Shamim, Sanjit Singh Batra, Neva C. Durand, Nathaniel T. Musial, Ragib Mostofa, Melanie Pham, Brian Glenn St Hilaire, Weijie Yao, Elena K. Stamenova, Marie Hoeger, Sarah K. Nyquist, Valeriya Korchina, Kelcie Pletch, Joseph P. Flanagan, , Erez Lieberman Aiden

Point-and-click correction of misassemblies on Hi-C heatmaps, paired with the automated 3D-DNA pipeline, gave chromosome-length wombat, opossum and raccoon scaffolds from just short-insert DNA-Seq and in situ Hi-C reads.

bioRxiv · Jan 28, 2018 · PreprintGenomics