Author

Marie Hoeger

Baylor College of MedicineORCID 0000-0002-7175-0736Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:genome assembly· 2 Research Focus:deconvolution· 1 Assay:Hi-C· 1 Organism:mouse· 1 Organism:plant (other)· 1 Organism:rat· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Erez Lieberman AideniD· 2 shared Melanie PhamiD· 2 shared Muhammad S. ShamimiD· 2 shared Neva C. DurandiD· 2 shared Olga DudchenkoiD· 2 shared Sanjit Singh BatraiD· 2 shared Sarah K. NyquistiD· 2 shared Ania Tomaszewicz· 1 shared

Activity by Year

2018-2018 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Erez Lieberman AidenORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum

Olga Dudchenko, Melanie Pham, Christopher G. Lui, Sanjit Singh Batra, Marie Hoeger, Sarah K. Nyquist, Neva C. Durand, Muhammad S. Shamim, Ido Machol, W. Erskine, Erez Lieberman Aiden, Parwinder Kaur

The paper uses Hi-C data to improve the genome assembly of Trifolium subterraneum, resulting in chromosome-length scaffolds covering 95% of the genome.

bioRxiv · Nov 20, 2018 · PreprintGenomics

The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000

Olga Dudchenko, Muhammad S. Shamim, Sanjit Singh Batra, Neva C. Durand, Nathaniel T. Musial, Ragib Mostofa, Melanie Pham, Brian Glenn St Hilaire, Weijie Yao, Elena K. Stamenova, Marie Hoeger, Sarah K. Nyquist, Valeriya Korchina, Kelcie Pletch, Joseph P. Flanagan, , Erez Lieberman Aiden

Point-and-click correction of misassemblies on Hi-C heatmaps, paired with the automated 3D-DNA pipeline, gave chromosome-length wombat, opossum and raccoon scaffolds from just short-insert DNA-Seq and in situ Hi-C reads.

bioRxiv · Jan 28, 2018 · PreprintGenomics