Author

Kenji Gerhardt

Georgia Institute of Technology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Organism:human· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Konstantinos T. KonstantinidisiD· 2 shared Adam M. PhillippyiD· 1 shared Aleksey S. KomissaroviD· 1 shared Alexander SuhiD· 1 shared Alice Maria GianiiD· 1 shared Amanda WilliamsiD· 1 shared Andrew D HuangiD· 1 shared Ann GregoryiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersMicrobiology

Konstantinos T. KonstantinidisORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

The complete genome of a songbird

Giulio Formenti, Nivesh Jain, Jack A Medico, Marco Sollitto, Dmitry Antipov, Suziane Alves Barcellos, Matthew T. Biegler, Ines Borges, Jong-How Chang, Ying Chen, Haoyu Cheng, Helena B. Conceição, Matthew H. Davenport, Zhongwang Li, Erick Duarte, , Erich David Jarvis

This paper presents the first fully phased, diploid, telomere-to-telomere genome of the zebra finch, revealing new genes and structural features.

Cell · Aug 1, 2026Peer-reviewedGenomics

ROCker models for reliable detection and typing of short-read sequences carrying mcr, erm, mph, and lnu antibiotic resistance genes

Konstantinos T. Konstantinidis, Roth E. Conrad, Kenji Gerhardt, Amanda Williams, Andrew D Huang

The paper introduces ROCker models for detecting and typing specific antibiotic resistance genes in short-read sequences, showing improved accuracy over existing methods.

bioRxiv · Feb 13, 2025 · PreprintMicrobiology

MetaPop: A pipeline for macro- and micro-diversity analyses and visualization of microbial and viral metagenome-derived populations

Ann Gregory, Kenji Gerhardt, Zhi-Ping Zhong, Benjamin Bolduc, Ben Temperton, Konstantinos T. Konstantinidis, Matthew B. Sullivan

MetaPop analyzes and visualizes microbial and viral metagenome-derived populations at macro- and micro-diversity levels, revealing lower viral nucleotide diversity in autistic children.

bioRxiv · Nov 1, 2020 · PreprintBioinformatics