Ying Chen

This paper presents the first fully phased, diploid, telomere-to-telomere genome of the zebra finch, revealing new genes and structural features.

The Vertebrate Genomes Project Phase I provides high-quality reference genomes for 816 species, enabling evolutionary and conservation insights across vertebrates.

The paper presents the first telomere-to-telomere diploid reference genome of the human embryonic stem cell line H9, revealing genomic features and ancestry.

The paper introduces TTT, an algorithm that resolves assembly graph tangles in genomes, improving the accuracy of complex regions in reference assemblies.

The paper uses long-read sequencing to identify pathogenic variants in autism cases, finding three pathogenic mutations and nine candidate structural variants missed by short-read sequencing.

The paper introduces the Amphibian Genomics Consortium to address gaps in amphibian genomic resources and promote international collaboration for research and conservation.

The paper presents a chromosome-level genome for the western chorus frog, identifies conserved chromosomal elements, rebel genes, and a new sex-linked region with structural variants.

The paper reports the complete mitochondrial genomes of two snake species and presents a phylogenetic analysis supporting their taxonomy and geographic relationships.