Author

L. Yvonnesdotter

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Assay:cryo-EM· 3 Research Focus:protein structure prediction· 2 Approach:Bayesian inference· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Approach:mechanistic / dynamical model· 1

Frequent Co-Authors

E. Lindahl· 3 shared C. Blau· 2 shared R. J. Howard· 2 shared U. Rovsnik· 2 shared B. O. Forsberg· 1 shared M. Carroni· 1 shared M. Lycksell· 1 shared Y. Zhuang· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 22 mutual co-author links

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3 shared papersBiophysics

E. Lindahl

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Author profile →

3 papers

Recent·Most cited

Automated simulation-based membrane-protein refinement into cryo-EM data

L. Yvonnesdotter, U. Rovsnik, C. Blau, M. Lycksell, R. J. Howard, E. Lindahl

This paper introduces an automated method using density-guided molecular dynamics simulations to refine membrane-protein models into cryo-EM maps, showing improved model quality and pixel-size correction.

Biophysical Journal · Jul 1, 2023Peer-reviewedBiophysics

Gentle and fast all-atom model refinement to cryo-EM densities via Bayes' approach

C. Blau, L. Yvonnesdotter, E. Lindahl

The paper introduces a Bayesian refinement method for cryo-EM density maps, improving structure modeling by balancing fit and stereochemistry with a new potential and adaptive force scaling.

bioRxiv · Sep 30, 2022 · PreprintBiophysics

Dynamic closed states of a ligand-gated ion channel captured by cryo-EM and simulations

U. Rovsnik, Y. Zhuang, B. O. Forsberg, M. Carroni, L. Yvonnesdotter, R. J. Howard, E. Lindahl

The paper reports cryo-EM structures and simulations of GLIC under different pH conditions, revealing conformational changes and electrostatic remodeling during proton-induced gating.

bioRxiv · Jan 4, 2021Biochemistry