Integrating single-cell and bulk transcriptomic perturbation resources reveals complementary therapeutic spaces for drug repurposing
Enock Niyonkuru, Umair Khan, Xinyu Tang, Laura Almonte, Eden Chun, Brenda A. A. B. Ametepe, Carlota Pereda Serras, Boris Oskotsky, Brice L Gaudilliere, David K. Stevenson, Jessica A Neely, Linda C. Giudice, Tomiko Oskotsky, Marina Sirota
CDRPipe integrates single-cell and bulk transcriptomic perturbation data to improve drug repurposing predictions by combining complementary resources.
bioRxiv · Jul 22, 2026 · PreprintBioinformatics