Author

Michael J. Mallory

University of Pennsylvania

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Genomics· 3 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 4 Research Focus:differential expression· 4 Organism:human· 4 Approach:statistical model· 4 Research Focus:gene regulatory network inference· 2 Organism:Drosophila· 1 Approach:experimental assay· 1 Organism:mouse· 1

Frequent Co-Authors

Kristen W. LynchiD· 4 shared Yoseph BarashiD· 3 shared Matthew R. GazzaraiD· 2 shared Sara R. CherryiD· 2 shared Anupama JhaiD· 1 shared Beatriz M. A. FontouraiD· 1 shared D. SchultziD· 1 shared John Lindberg· 1 shared

Activity by Year

2017-2025 · peak 1/yr

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10 top collaborators · 24 mutual co-author links

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4 shared papersGenomics

Kristen W. LynchORCID

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4 papers

Recent·Most cited

Integrative analysis of RNA binding proteins identifies DDX55 as a novel regulator of 3'UTR isoform diversity

Matthew R. Gazzara, Timothy Cater, Michael J. Mallory, Yoseph Barash, Kristen W. Lynch

The paper identifies DDX55 as a novel regulator of 3'UTR isoform diversity through integrative analysis of RNA binding protein depletion experiments.

Genome biology · Nov 12, 2025Peer-reviewedGenomics

Alternative splicing redefines landscape of commonly mutated genes in acute myeloid leukemia

Osvaldo D. Rivera, Michael J. Mallory, Mathieu Quesnel-Vallières, Rakesh Chatrikhi, D. Schultz, Martin P Carroll, Yoseph Barash, Sara R. Cherry, Kristen W. Lynch

The paper shows that alternative splicing contributes to gene disruption in AML, increasing the number of patients with functional gene loss beyond what is detected by mutations alone.

Proceedings of the National Academy of Sciences · Apr 5, 2021Peer-reviewedGenomics

Viral-Induced Alternative Splicing of Host Genes Promotes Influenza Replication

Matthew G. Thompson, Mark Dittmar, Michael J. Mallory, Prasanna Bhat, Max Ferretti, Beatriz M. A. Fontoura, Sara R. Cherry, Kristen W. Lynch

eLife · Dec 3, 2020Peer-reviewedMolecular Biology

Ancient antagonism between CELF and RBFOX families tunes mRNA splicing outcomes

Matthew R. Gazzara, Michael J. Mallory, Renat Roytenberg, John Lindberg, Anupama Jha, Kristen W. Lynch, Yoseph Barash

The paper identifies antagonistic splicing regulation between CELF2 and RBFOX family proteins in human T cells and shows evolutionary conservation across species.

Genome Research · Aug 1, 2017Peer-reviewedGenomics