Author

Nadja Harnischfeger

University of Würzburg

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Cancer Biology· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Assay:proteomics· 1

Frequent Co-Authors

Kai KretzschmariD· 2 shared Lili Szabó· 2 shared Stefan Hartmann· 2 shared Adam J. KimpleiD· 1 shared Aditya PratapaiD· 1 shared Alexander V. PredeusiD· 1 shared Alexandre Fernandes· 1 shared Ameer GhodkeiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersCancer Biology

Kai KretzschmarORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

NELLY enables patient-centric drug prioritization through interpretable drug-conditioned gene weighting

C Peralta Viteri, Nadja Harnischfeger, Lili Szabó, Stefan Hartmann, Kai Kretzschmar

This paper introduces NELLY, a deep learning model that prioritizes patient-specific therapies by integrating transcriptomic and chemical data, outperforming existing methods in drug response prediction.

bioRxiv · Aug 26, 2026 · PreprintCancer Biology

The Immunoregulatory Architecture of the Adult Oral Cavity

Bruno Fernandes Matuck, Khoa Huynh, Diana Pereira, Quinn T. Easter, XiuYu Zhang, Meik Kunz, Nikhil M Kumar, Aditya Pratapa, Brittany Rupp, Ameer Ghodke, Alexander V. Predeus, Alexandre Fernandes, Lili Szabó, Stefan Hartmann, Nadja Harnischfeger, , Kevin M. Byrd

This paper presents a single-cell and spatial proteotranscriptomic atlas of human oral tissues, identifying fibroblasts as key immunoregulatory hubs and revealing changes in disease states.

Cell Press Blue · Mar 23, 2026Peer-reviewedCell Biology