Author

Nemanja Despot Marjanovic

Broad Institute

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Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Organism:mouse· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Aviv RegeviD· 2 shared Aidan C. DalyiD· 1 shared Alex K. ShalekiD· 1 shared Alexandra–Chloé VillaniiD· 1 shared Amanda J. KedaigleiD· 1 shared Boaz BarakiD· 1 shared Britta LötstedtiD· 1 shared Cynthia C. Hession· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersSystems Biology

Aviv RegevORCID

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2 papers

Recent·Most cited

Tissue and cellular spatiotemporal dynamics in colon aging

Aidan C. Daly, Francesco Cambuli, Tarmo Äijö, Britta Lötstedt, Nemanja Despot Marjanovic, Sara Fernandez, Olena Kuksenko, Matthew Smith-Erb, Daniel Domovic, Nicholas Van Wittenberghe, Eugene Drokhlyansky, Gabriel Kenneth Griffin, Hemali P. Phatnani, Richard Bonneau, Aviv Regev, Sanja Vicković

This study creates a spatial and cellular atlas of the colon across age groups using spatial transcriptomics and single nucleus RNA-seq, identifying age-related molecular gradients and multicellular programs.

Nature Biotechnology · Oct 22, 2025Peer-reviewedSystems Biology

Systematic comparative analysis of single cell RNA-sequencing methods

Jiarui Ding, Xian Adiconis, Sean Simmons, Monika S. Kowalczyk, Cynthia C. Hession, Nemanja Despot Marjanovic, Travis K. Hughes, Marc H. Wadsworth, Tyler Burks, Lan Nguyễn, John Kwon, Boaz Barak, William H. Ge, Amanda J. Kedaigle, Shaina L. Carroll, , Joshua Z. Levin

Seven single-cell and single-nucleus protocols run side by side on the same cell lines, PBMCs and mouse cortex, analysed through one pipeline: 10x Chromium led the high-throughput methods.

bioRxiv · May 23, 2019 · PreprintGenomics✦ In-depth digest