Author

Nicholas H. Bergman

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Assay:whole-genome sequencing· 2 Organism:Arabidopsis· 1 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Adam M. PhillippyiD· 3 shared Sergey KoreniD· 3 shared Jason Rafe MilleriD· 2 shared Adam B. Mallonee· 1 shared Benjamin D. RoseniD· 1 shared Brian D. Ondov· 1 shared Brian P. WalenziD· 1 shared David BrowniD· 1 shared

Activity by Year

2016-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersBioinformatics

Adam M. PhillippyORCID

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Author profile →

3 papers

Recent·Most cited

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line adaptations to in vitro viral propagation

Jason Rafe Miller, Sergey Koren, Kari A. Dilley, Vinita Puri, David Brown, Derek M. Harkins, Françoise Thibaud‐Nissen, Benjamin D. Rosen, Xiao‐Guang Chen, Zhijian Jake Tu, Igor V. Sharakhov, Maria V. Sharakhova, Robert Sebra, Timothy B. Stockwell, Nicholas H. Bergman, , Reed S. Shabman

The paper presents an annotated genome assembly of the Aedes albopictus C6/36 cell line, revealing genetic features and gene expression patterns relevant to viral propagation.

GigaScience · Jan 10, 2018Peer-reviewedGenomics

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

Sergey Koren, Brian P. Walenz, Konstantin Berlin, Jason Rafe Miller, Nicholas H. Bergman, Adam M. Phillippy

Canu's tf-idf weighted MinHash overlapping and error-filtered sparse overlap graph yield complete Nanopore microbial genomes and contig NG50 above 21 Mbp for PacBio human and Drosophila.

Genome Research · May 1, 2017Peer-reviewedBioinformatics✦ In-depth digest

Mash: fast genome and metagenome distance estimation using MinHash

Brian D. Ondov, Todd J. Treangen, Páll Melsted, Adam B. Mallonee, Nicholas H. Bergman, Sergey Koren, Adam M. Phillippy

Mash estimates genome and metagenome distances using MinHash for efficient clustering and search of large sequence collections.

Genome Biology · Jun 20, 2016Peer-reviewedBioinformatics