Jason Rafe Miller

Spatial and Temporal Regulation of Parent-of-Origin Allelic Expression in the Endosperm

This study identifies spatial and temporal regulation of parent-of-origin allelic expression in endosperm domains using FANS and RNASeq.

Regulation of Parent-of-Origin Allelic Expression in Arabidopsis thaliana endosperm

The paper identifies over 300 imprinted genes in Arabidopsis thaliana endosperm and shows that imprinting involves differential dosage rather than binary allele expression.

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line adaptations to in vitro viral propagation

The paper presents an annotated genome assembly of the Aedes albopictus C6/36 cell line, revealing genetic features and gene expression patterns relevant to viral propagation.

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

Canu's tf-idf weighted MinHash overlapping and error-filtered sparse overlap graph yield complete Nanopore microbial genomes and contig NG50 above 21 Mbp for PacBio human and Drosophila.

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod

The paper improves the Atlantic cod genome assembly using long-read sequencing and multiple assembly programs, revealing a high density of tandem repeats and heterozygous variation.