Author

O. Fedrigo

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Cell Biology· 2 Cancer Biology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 3 Organism:zebrafish· 3 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1

Frequent Co-Authors

B. Haase· 3 shared E. D. Jarvis· 3 shared H. U. Tilgner· 2 shared J. Mountcastle· 2 shared J.-D. Luo· 2 shared M. T. Biegler· 2 shared A. Bours· 1 shared A. D. Auerbach· 1 shared

Activity by Year

2021-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersCell Biology

B. Haase

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Pronounced early differentiation underlies zebra finch gonadal germ cell development.

M. T. Biegler, K. Belay, W. Wang, C. Szi, P. G. Collier, J.-D. Luo, B. Haase, G. L. Gedman, A. V. Sidhu, E. Harter, C. Rivera-Lopez, K. Amoako-Boadu, O. Fedrigo, H. U. Tilgner, T. T. Carroll, , A. L. Keyte

This study compares germ cell development between chicken and zebra finch using single-cell RNA sequencing, revealing distinct early germ cell types in zebra finch that are absent in chicken.

bioRxiv · Dec 30, 2023Cell Biology

Distinct patterns of genetic variation at low-recombining genomic regions represent haplotype structure

J. Ishigohoka, K. Bascon-Cardozo, A. Bours, J. Fuss, A. Rhie, J. Mountcastle, B. Haase, W. Chow, J. Collins, K. Howe, M. Uliano-Silva, O. Fedrigo, E. D. Jarvis, J. Perez-Tris, J. C. Illera, M. Liedvogel

The paper identifies distinct genetic variation patterns in low-recombining regions of Eurasian blackcap genomes, attributing them to reduced recombination rates rather than selection.

bioRxiv · Dec 22, 2021Evolutionary Biology

Fanconi Anemia Pathway Deficiency Drives Copy Number Variation in Squamous Cell Carcinomas

A. L. H. Webster, M. A. Sanders, K. Patel, R. Dietrich, R. J. Noonan, F. P. Lach, R. R. White, A. Goldfarb, K. Hadi, M. M. Edwards, F. X. Donovan, M. Jung, S. Sridhar, O. Fedrigo, H. Tian, , P. Campbell

This paper shows that FA pathway deficiency in squamous cell carcinomas leads to high structural variant rates and copy number alterations, linking genomic instability to tumor progression.

bioRxiv · Aug 14, 2021 · PreprintCancer Biology

Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9

M. T. Biegler, O. Fedrigo, P. Collier, J. Mountcastle, B. Haase, H. U. Tilgner, E. D. Jarvis

The paper describes an immortalized zebra finch cell line and demonstrates its use for gene characterization and CRISPR-Cas9 knockout.

bioRxiv · May 27, 2021Cell Biology