Author

Osnat Ophir

Technion – Israel Institute of Technology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 4

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 4 Approach:experimental assay· 3 Organism:mouse· 3 Assay:scRNA-seq· 3 Assay:spatial transcriptomics· 3 Approach:statistical model· 2 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Amit ZeiseliD· 4 shared Hannah HochgerneriD· 3 shared Muhammad TibiiD· 3 shared Zhige Lin· 3 shared Adan Akarieh· 1 shared Aya DhamshyiD· 1 shared Bettina Brokowski· 1 shared Christian RosenmundiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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4 shared papersNeuroscience

Amit ZeiselORCID

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Author profile →

4 papers

Recent·Most cited

A Sexually Dimorphic Neuronal Cluster in the Mouse Medial Amygdala Exhibits Binary Activation Mode Based on Male Sexual Status

Tamar Licht, Adan Akarieh, Aya Dhamshy, Amit Zeisel, Osnat Ophir, Dan Rokni

Proceedings of the National Academy of Sciences · Jan 22, 2026Peer-reviewedNeuroscience

Brain-wide monosynaptic single-neuron connectivity with ROInet-seq

Zhige Lin, Osnat Ophir, Thorsten Trimbuch, Bettina Brokowski, Muhammad Tibi, Hermann Schmidt, Christian Rosenmund, Hannah Hochgerner, Amit Zeisel

The paper introduces ROInet-seq, a method to map brain-wide monosynaptic connectivity using barcoded rabies virus and RNA-sequencing, revealing preserved regional network motifs in cortical areas.

bioRxiv · Apr 4, 2024 · PreprintNeuroscience

A telencephalon cell type atlas for goldfish reveals diversity in the evolution of spatial structure and cell types

Muhammad Tibi, Stav Biton Hayun, Hannah Hochgerner, Zhige Lin, Shachar Givon, Osnat Ophir, Tal Shay, Thomas Mueller, Ronen Segev, Amit Zeisel

This study creates a goldfish telencephalon cell type atlas using single-cell RNA-seq and spatial transcriptomics, revealing conserved and divergent features in neural organization across vertebrates.

Science Advances · Nov 1, 2023Peer-reviewedNeuroscience

Cell types in the mouse amygdala and their transcriptional response to fear conditioning

Hannah Hochgerner, Muhammad Tibi, Shai Netser, Osnat Ophir, Nuphar Reinhardt, Shelly Singh, Zhige Lin, Shlomo Wagner, Amit Zeisel

The paper identifies cell types in the mouse amygdala and their transcriptional response to fear conditioning using single-cell RNA-seq and spatial transcriptomics.

bioRxiv · Oct 25, 2022 · PreprintNeuroscience