Author

P. Andeer

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Plant Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Approach:experimental assay· 2 Organism:plant (other)· 2 Organism:bacteria (other)· 1 Research Focus:cell-cell communication· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1

Frequent Co-Authors

T. Northen· 3 shared A. Crits-Christoph· 1 shared A. Golini· 1 shared A. Mukhopadhyay· 1 shared B. C. Thomas· 1 shared B. P. Bowen· 1 shared C. Pan· 1 shared D. Burstein· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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3 shared papersMicrobiology

T. Northen

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Assessing horizontal gene transfer in the rhizosphere of Brachypodium distachyon using fabricated ecosystems (EcoFABs)

S. Priya, S. Rossbach, T. Eng, P. Andeer, H.-H. Lin, J. Mortimer, T. Northen, A. Mukhopadhyay

This study demonstrates the use of EcoFABs to measure horizontal gene transfer frequency in the rhizosphere of Brachypodium distachyon, showing dependencies on plant stage, root exudates, donor cell numbers, and environmental stress.

bioRxiv · Mar 14, 2024 · PreprintMicrobiology

Rhizonet: Image Segmentation for Plant Root in Hydroponic Ecosystem

D. Ushizima, Z. Sordo, P. Andeer, J. Sethian, T. Northen

Rhizonet is a deep learning model for segmenting plant root images in hydroponic systems, improving accuracy and reducing manual effort in root biomass analysis.

bioRxiv · Nov 20, 2023 · PreprintPlant Biology

A defined medium based on R2A for cultivation and exometabolite profiling of soil bacteria

M. de Raad, Y. Li, P. Andeer, S. M. Kosina, N. R. Saichek, A. Golini, L. Z. Han, Y. Wang, B. P. Bowen, R. Chakraborty, T. R. Northen

The paper develops a defined medium (NLDM) for cultivating soil bacteria and profiling exometabolites, showing it supports growth of 53 diverse isolates and enables metabolite tracking via LC-MS/MS.

bioRxiv · May 23, 2021 · PreprintMicrobiology

Processing of grassland soil C-N compounds into soluble and volatile molecules is depth stratified and mediated by genomically novel bacteria and archaea

S. Diamond, P. Andeer, Z. Li, A. Crits-Christoph, D. Burstein, K. Anantharaman, K. R. Lane, B. C. Thomas, C. Pan, T. Northen, J. F. Banfield

The paper links genomically novel soil microbes to depth-stratified carbon and nitrogen cycling by analyzing metagenomic and proteomic data from grassland soils.

bioRxiv · Oct 17, 2018 · PreprintMicrobiology