Author

Peter Freese

Massachusetts Institute of Technology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Brenton R. GraveleyiD· 2 shared Christopher B. BurgeiD· 2 shared Eric L. Van NostrandiD· 2 shared Gene Wei-Ming YeoiD· 2 shared Henry PrattiD· 2 shared Xintao Wei· 2 shared Alexander Eckehart UrbaniD· 1 shared Amanda Su· 1 shared

Activity by Year

2019-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersGenomics

Brenton R. GraveleyORCID

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2 papers

Recent·Most cited

A Large-Scale Binding and Functional Map of Human RNA Binding Proteins

Eric L. Van Nostrand, Peter Freese, Henry Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M. Blue, Jiayu Chen, Neal A. L. Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra A Bazile, Louis Philip Benoit Bouvrette, , Gene Wei-Ming Yeo

The paper maps and characterizes RNA elements recognized by human RNA binding proteins in K562 and HepG2 cells, expanding the catalog of functional elements in the human genome.

Nature · Jul 29, 2020Peer-reviewedGenomics

Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA

Ei-Wen Yang, Jae Hoon Bahn, Yun-Hua Esther Hsiao, Boon Xin Tan, Yiwei Sun, Ting Fu, Bo Zhou, Eric L. Van Nostrand, Henry Pratt, Peter Freese, Xintao Wei, Giovanni Quinones-Valdez, Alexander Eckehart Urban, Brenton R. Graveley, Christopher B. Burge, , Xinshu Grace Xiao

The paper introduces BEAPR, a computational method to detect allele-specific binding of RNA-binding proteins, showing it outperforms existing methods and identifies disease-relevant variants.

Nature Communications · Mar 22, 2019Peer-reviewedBioinformatics