Author

R. Chikhi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 1 Genetics· 1 Genomics· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:cell type annotation· 2 Organism:human· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1

Frequent Co-Authors

A. A. Abdulkadir· 1 shared A. A. Varela· 1 shared A. Carroll· 1 shared A. English· 1 shared A. Fiscutean· 1 shared A. Giros· 1 shared A. J. Vela· 1 shared A. Kolesnikov· 1 shared

Activity by Year

2022-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperGenomics

A. A. Abdulkadir

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Host control and regulation of human anellovirus persistence

J. C. Gutierrez, T. A. Ali, C. C. Honeycutt, J. H. Neo, K. Helmsauer, S. S. Nyeo, A. Le, A. J. Vela, L. C. Kida, A. A. Varela, R. C. Ardy, E. Metzner, J. C. Ulirsch, R. S. Dhindsa, P. P. Fiziev, , Caleb A. Lareau

This study identifies host factors and cellular contexts governing anellovirus persistence through genomic, transcriptomic, and functional analyses.

bioRxiv · Nov 9, 2026 · PreprintGenetics

The Genome In A Bottle HG002 assembly-based variant benchmark set enables comprehensive benchmarking of small and structural variants.

N. D. Olson, N. Dwarshuis, N. F. Hansen, S. Koren, A. Rhie, J. H. McDaniel, J. Wagner, G. Berry, K. Shafin, A. English, C. T. Saunders, R. Kundu, J. M. Holt, D. Freed, A. A. Abdulkadir, , Lan

The paper introduces a comprehensive variant benchmark set derived from a high-quality diploid assembly, improving small and structural variant detection across complex genomic regions.

bioRxiv · Oct 1, 2026 · PreprintGenomics

The genomics and evolution of inter-sexual mimicry and female-limited polymorphisms in damselflies

B. Willink, K. Tunström, S. Nilen, R. Chikhi, T. Lemane, M. Takahashi, Y. Takahashi, E. I. Svensson, C. W. Wheat

This study identifies the genomic basis of female-limited morphs and male mimicry in damselflies, revealing structural variants and transposable element activity driving these phenotypes.

bioRxiv · Mar 27, 2023Evolutionary Biology

Unlocking the microblogging potential for science and medicine

A. Sarkar, A. Giros, L. Mockly, J. Moore, A. Moore, A. Nagareddy, B. Fu, A. Fiscutean, K. Chhugani, N. Darci-Maher, Y. Patel, V. Sarwal, Y. Chang, S. Ginjala, L. X. Garmire, , S. Mangul

The paper analyzes Twitter activity of 6,000 biomedical scientists, finding gender differences in tweeting behavior and engagement patterns.

bioRxiv · Apr 22, 2022 · PreprintScientific Communication & Education