Author

S. Koren

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 2 Microbiology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Organism:human· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

A. A. Abdulkadir· 1 shared A. Carroll· 1 shared A. English· 1 shared A. Golob-Urbanc· 1 shared A. Kolesnikov· 1 shared A. M. Phillippy· 1 shared A. Munoz-Barrera· 1 shared A. Pucer Janez· 1 shared

Activity by Year

2018-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperGenomics

A. A. Abdulkadir

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

The Genome In A Bottle HG002 assembly-based variant benchmark set enables comprehensive benchmarking of small and structural variants.

N. D. Olson, N. Dwarshuis, N. F. Hansen, S. Koren, A. Rhie, J. H. McDaniel, J. Wagner, G. Berry, K. Shafin, A. English, C. T. Saunders, R. Kundu, J. M. Holt, D. Freed, A. A. Abdulkadir, , Lan

The paper introduces a comprehensive variant benchmark set derived from a high-quality diploid assembly, improving small and structural variant detection across complex genomic regions.

bioRxiv · Oct 1, 2026 · PreprintGenomics

A genetically encoded photo-proximity labeling approach for mapping protein territories

N. Hananya, X. Ye, S. Koren, T. W. Muir

This paper introduces a photo-proximity labeling system using visible light to capture protein interactomes with high temporal resolution and correlates it with imaging and proteomics.

bioRxiv · Jul 30, 2022 · PreprintBiochemistry

Lipid droplets control mitogenic lipid mediator production in human cancer cells

E. Jarc Jovicic, A. Pucer Janez, T. O. Eichmann, S. Koren, V. Brglez, P. M. Jordan, J. Gerstmeier, D. Lainscek, A. Golob-Urbanc, R. Jerala, G. Lambeau, O. Werz, R. Zimmermann, T. Petan

The paper shows lipid droplets regulate mitogenic lipid mediator production in cancer cells by controlling PUFAs availability through ATGL and DGAT1.

bioRxiv · Nov 25, 2021Biochemistry

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation

D. Bickhart, M. Watson, S. Koren, K. Panke-Buisse, L. M. Cersosimo, M. O. Press, C. P. Van Tassell, J. A. S. Van Kessel, B. J. Haley, S. W. Kim, C. Heiner, G. Suen, K. Bakshy, I. Liachko, S. T. Sullivan, , T. P. L. Smith

This study uses long-read sequencing and proximity ligation to improve the characterization of a complex cattle rumen microbial community, identifying novel viral-host associations and more antimicrobial resistance genes.

bioRxiv · Dec 9, 2018Microbiology

Amycomicin: a potent and specific antibiotic discovered with a targeted interaction screen

G. Pishchany, E. Mevers, S. Ndousse-Fetter, D. J. Horvath, C. R. Paludo, E. A. Silva-Junior, S. Koren, E. P. Skaar, J. Clardy, R. Kolter

This paper discovers a new antibiotic, amycomicin, through a community-based screening approach targeting Staphylococcus aureus.

bioRxiv · May 8, 2018Microbiology