Author

R. L. Marine

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:variant calling· 2 Organism:virus· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

T. F. F. Ng· 3 shared C. J. Castro· 2 shared W. A. Nix· 2 shared A. A. Gelfand· 1 shared A. Lyden· 1 shared A. Montmayeur· 1 shared A. Ramesh· 1 shared A. S. Lopez· 1 shared

Activity by Year

2019-2019 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersMicrobiology

T. F. F. Ng

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

The effect of variant interference on de novo assembly for viral deep sequencing

C. J. Castro, R. L. Marine, E. Ramos, T. F. F. Ng

This study shows that variant interference in viral deep sequencing leads to fragmented assemblies, and demonstrates that this effect is consistent across assemblers and independent of genome features.

bioRxiv · Oct 23, 2019Microbiology

Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses

R. L. Marine, L. C. Magana, C. J. Castro, K. Zhao, A. Montmayeur, A. Schmidt, M. Diez-Valcarce, T. F. F. Ng, J. Vinje, C. C. Burns, W. A. Nix, P. A. Rota, M. S. Oberste

This study compares the Illumina MiSeq and Ion Torrent platforms for whole-genome sequencing of picornaviruses and caliciviruses, finding that Ion Torrent S5 outperforms PGM in data quality and cost, while MiSeq is more cost-effective for lower throughput runs.

bioRxiv · Jul 17, 2019Microbiology

Serological and metagenomic interrogation of cerebrospinal fluid implicates enteroviruses in pediatric acute flaccid myelitis

R. D. Schubert, I. Hawes, P. S. Ramachandran, A. Ramesh, E. D. Crawford, J. E. Pak, W. Wu, C. K. Cheung, B. D. O'Donovan, C. M. Tato, A. Lyden, M. Tan, R. Sit, G. Sowa, H. A. Sample, , Ob

This study identifies high levels of enterovirus antibodies in cerebrospinal fluid of children with acute flaccid myelitis compared to controls, suggesting a causal role for non-polio enteroviruses.

bioRxiv · Jun 19, 2019Microbiology