Author

R. Patro

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Cancer Biology· 1

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Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

A. A. Schäffer· 1 shared B. Gasmi· 1 shared C. C. Harris· 1 shared C. Sahinalp· 1 shared C. Seibert· 1 shared E. M. Gertz· 1 shared E. Ruppin· 1 shared F. Schischlik· 1 shared

Activity by Year

2020-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperCancer Biology

A. A. Schäffer

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1 paper

Recent·Most cited

scRNA-seq analysis of colon and esophageal tumors uncovers abundant microbial reads in myeloid cells undergoing proinflammatory transcriptional alterations

W. Robinson, J. K. Stone, F. Schischlik, B. Gasmi, M. C. Kelly, C. Seibert, K. Dadkhah, E. M. Gertz, J. S. Lee, K. Zhu, L. Ma, X. W. Wang, C. Sahinalp, R. Patro, M. D. Leiserson, , E. Ruppin

The paper develops a computational pipeline to identify microbial reads in scRNA-seq data and finds that microbial reads are enriched in myeloid cells with proinflammatory transcriptional changes.

bioRxiv · May 14, 2020 · PreprintCancer Biology