Author

B. Gasmi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. A. Alfaifi· 1 shared A. A. Schäffer· 1 shared A. A. Sultan· 1 shared B. Warner· 1 shared C. C. Harris· 1 shared C. Sahinalp· 1 shared C. Seibert· 1 shared D. Kleiner· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperMicrobiology

A. A. Alfaifi

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

SARS-CoV-2 Infection of Salivary Glands Compromises Oral Antifungal InnateImmunity and Predisposes to Oral Candidiasis

A. A. Alfaifi, T. W. Wang, P. Perez, A. A. Sultan, T. F. Meiller, P. Rock, D. Kleiner, D. S. Chertow, S. Hewitt, B. Gasmi, S. Stein, S. Ramelli, D. Martin, B. Warner, M. A. Jabra-Rizk

This study shows SARS-CoV-2 infection reduces histatin-5 in salivary glands, impairing antifungal immunity and increasing Candida albicans prevalence in COVID-19 patients.

bioRxiv · May 13, 2024 · PreprintMicrobiology

scRNA-seq analysis of colon and esophageal tumors uncovers abundant microbial reads in myeloid cells undergoing proinflammatory transcriptional alterations

W. Robinson, J. K. Stone, F. Schischlik, B. Gasmi, M. C. Kelly, C. Seibert, K. Dadkhah, E. M. Gertz, J. S. Lee, K. Zhu, L. Ma, X. W. Wang, C. Sahinalp, R. Patro, M. D. Leiserson, , E. Ruppin

The paper develops a computational pipeline to identify microbial reads in scRNA-seq data and finds that microbial reads are enriched in myeloid cells with proinflammatory transcriptional changes.

bioRxiv · May 14, 2020 · PreprintCancer Biology